1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CACAGAAAACTGCAGAAAAGGACTCAGAATGCAATGTCAGTATCCTGAATATACAGGTTGGCCTTATTCGCAAAGCATGGAAGCACCCATCTGCTGACAGgtacccataacttttctgcttatgcaacaattcaaaatggttcaacagttgtattgtgctctttgaacaaatattctaactggtctctcttttcag
species | Oryza sativa |
transcript | LOC_Os01g60660.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAAGCATGGAAGCACCCATCTGCTGACAG CCTCTTGGTTGAGGAGATAGATTTGGGAGATGGCAATGTGCATCAAGTTGTEST: gi|29672822|gb|CB669097.1|CB669097
genomic: AAAGCATGGAAGCACCCATCTGCTGACAGgtacccataa ... ctcttttcagCCTCTTGGTTGAGGAGATAGATTTGGGAGATGGCAATGTGCATCAAGTTGT
EST: ATACAGGTTGGCCTTATTCGCAAAGCATGGAAGCACCCATCTGCTGACAG CCTCTTGGTTGAGGAGATAGATTTGGGAGATGGCAATGTGCATCAAGTTGTEST: gi|29642064|gb|CB647071.1|CB647071
genomic: ATACAGGTTGGCCTTATTCGCAAAGCATGGAAGCACCCATCTGCTGACAGgtacccataa ... ctcttttcagCCTCTTGGTTGAGGAGATAGATTTGGGAGATGGCAATGTGCATCAAGTTGT
EST: ATACAGGTTGGCCTTATTCGCAAAGCATGGAAGCACCCATCTGCTGACAG CCTCTTGGTTGAGGAGATAGATTTGGGAGATGGCAATGTGCATCAAGTTGTEST: gi|29642108|gb|CB647115.1|CB647115
genomic: ATACAGGTTGGCCTTATTCGCAAAGCATGGAAGCACCCATCTGCTGACAGgtacccataa ... ctcttttcagCCTCTTGGTTGAGGAGATAGATTTGGGAGATGGCAATGTGCATCAAGTTGT
EST: ATACAGGTTGGCCTTATTCGCAAAGCATGGAAGCACCCATCTGCTGACAG CCTCTTGGTTGAGGAGATAGATTTGGGAGATGGCAATGTGCATCAAGTTGT
genomic: ATACAGGTTGGCCTTATTCGCAAAGCATGGAAGCACCCATCTGCTGACAGgtacccataa ... ctcttttcagCCTCTTGGTTGAGGAGATAGATTTGGGAGATGGCAATGTGCATCAAGTTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACAGAAAACTGCAGAAAAGGACTCAGAATGCAATGTCAGTATCCTGAATATACAGGTTGGCCTTATTCGCAAAGCATGGAAGCACCCATCTGCTGACAGgtacccataacttttctgcttatgcaacaattcaaaatggttcaacagttgtattgtgctctttgaacaaatattctaactggtctctcttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG