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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACGTGTCAACCTGCCGAATGGTGACATGGTTGGTCACACTGGTGATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaaacaagacaaaatatatgcagacagttatttctgcaagtcgtcatgtaccgtaatggtaatccctcccctcctggaacag

Basic information

species Oryza sativa
transcript LOC_Os01g60190.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g60190.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM5G833389_T02 (Zea mays), 5'ss of exon 8
GTACGTGTCAACCTGCCGAATGGTGACATGGTTGGTCACACTGGTGATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgag--cacaaacaaga------caaaatatatgcagaca-gttattt---ctgcaagtcgtcatgtaccgtaatggtaatccctcccct--cctggaacag-----------------------------------------
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||  ||| ||  | |        | || | ||  | |   |||| |    || ||||   | | |||   |||     | | | |  |  |  |   ||                                          
GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcaccaatgaaagttcgctgacatgtgtgttgtcttattatctgcattggaagttcgcttatacatcaataaaggttcttacagtagcacgcttcataggcctttgcctattttttaaccaagtgttcttctgaacag

upper sequence: LOC_Os01g60190.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G003385_T02 (Zea mays), 5'ss of exon 8
GTACGTGTCAACCTGCCGAATGGTGACATGGTTGGTCACACTGGTGATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcaca--aacaaga------caaaatatatgcagacagttatttctgcaagtcgtcatgtaccgtaatggtaatccctcccctcctggaacag-----------------------------------------------
||||||||||||||||| |||||||||||||||||||||||||| |||||||| || || || |||||||||||||||||||| ||||| |||||||||||  ||  || || |        | || | ||  | ||   |||  |     | |  |  |     |    |||    || | | | | | ||                                                
GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGGGATATTGAGGCTACCGTTGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcatcaataaaagttcgcttacatgtgtgttgtca-ccattattctgcattggaagttcatacatcaataaaagttcacttacagtagcacacttgataggcttttgcatatgtttaactagatgttcttctgaacag

upper sequence: LOC_Os01g60190.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA09G40690.1 (Glycine max), 5'ss of exon 7
GTACGTGTCAACCTGCCGAATGGTGACATGGTTGGTCACACTGGTGATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaaacaagacaaaatatatgcagacagttatttctgcaag--tcgtcatgtaccgtaatggtaatccctcccctcctggaacag---------
||||| |||||||| || |||||||||||||| || || || ||||| |||||||| || || || ||||||||||||||||| |  || || |||||  | |     |     |||| | |     || || |||    ||   | || || | |  |    |   |  ||    |  | |   |          
GTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATTGAAGCAACAGTTGTGGCTTGCAAGGCAGCTGATGCTGCTGTGAAGgtatgaagcttaattttcaaatttgttggagcatttctttaaataaagtttgttatattctttttaagctctagctgaattttttgggaattctttattt

upper sequence: LOC_Os01g60190.1 (Oryza sativa), 5'ss of exon 8
lower sequence: AT3G08590.2 (Arabidopsis thaliana), 5'ss of exon 6
GTACGTGTCAACCTGCCGAATGGTGACATGGTTGGTCACACTGGTGATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgt--gagcacaaacaagacaaaatat----atgcagacagttatttctgcaagtcgtcatgtaccgtaatggtaatccctcccctcctggaacag
|| ||||| |||||||| ||||| || ||||| || || ||||||||||||||||| || || ||||| ||  | || |||||    || || | |||  ||   |||  ||      | ||    |||     |    ||  |   ||   | |   ||  || |  |  |  |     |    |     
GTGCGTGTAAACCTGCCAAATGGAGATATGGTGGGGCATACTGGTGATATTGAAGCAACTGTTGTTGCCTGTGAAGCTGCTGATCGTGCTGTGAGGgtatgatttcaataaatttgtgacatgggaatgttagaaaccgttcttagtagcaatgactcact-tagttttggtgtcctggtttgcag-----

upper sequence: LOC_Os01g60190.1 (Oryza sativa), 5'ss of exon 8
lower sequence: AT1G09780.1 (Arabidopsis thaliana), 5'ss of exon 5
GTACGTGTCAACCTGCCGAATGGTGACATGGTTGGTCACACTGGTGATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaaacaagacaa-aatatatgcagacagttatttctgcaagt-cgtcatgtaccgtaatggtaatccctcccctcctggaacag
|| || || ||| | || ||||| || ||||| ||||| || |||||||||||||||||||| ||||| ||| |||| |||||    || || |||||  |    |  |    |   | |  |    |   | || | ||  |||  || |  || |  |    |  |        | | |      
GTGCGAGTTAACATTCCAAATGGAGATATGGTGGGTCATACAGGTGATATTGAAGCCACGGTTGTTGCATGCGAGGCTGCTGATCTTGCTGTGAAGgtatgttttataagtttattgacaagtcttaatgatgatatgtgtgagtgtgtgacttagcccacaaatggtttggttgttgcag------

upper sequence: LOC_Os01g60190.1 (Oryza sativa), 5'ss of exon 8
lower sequence: Vv08s0056g00200.t01 (Vitis vinifera), 5'ss of exon 7
GTACGTGTCAACCTGCCGAATGGTGACATGGTTGGTCACACTGGTGATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaaacaagacaaaatatatgcagacagttatttctgcaagtcgtcatgtaccgtaatggtaatccctccc-ctcctggaacag-----------
|| ||||| ||||| || |||||||||||||| || ||||||||||||||||| || ||  | || ||||||||||| ||||| ||||| || |||||  |       |       |||| | |      | |    |  |   | |    | ||  | ||||||    ||   |||    || ||           
GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATTGAGGCTACAATTGTAGCTTGCAAGGCTGCTGATGAAGCTGTCAAGgtatggtgctttacttttctatatgttcttttt-tcaggcataaattgcatacatttccagattggtaagttgtcaaactcacttaatagacatttcatgt

upper sequence: LOC_Os01g60190.1 (Oryza sativa), 5'ss of exon 8
lower sequence: EFJ26058 (Selaginella moellendorffii), 5'ss of exon 7
GTACGTGTCAACCTGCCGAATGGTGACATGGTTGGTCACACTGGTGATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtga-gcacaaacaagacaaaatatatg---cagacagttatttctgcaagtcgtcatgtaccgtaatggtaatccctcccctcctggaacag
 || | || ||  | || |||||||||||||||||||||||||| ||| |  | || ||  | || |||||  | || || ||  | || |||||||||| |  |     |     | | | ||   |||||  |  |||       |  || || |                                
ATAAGGGTTAATTTACCCAATGGTGACATGGTTGGTCACACTGGAGATCTCAAGGCGACCATTGTGGCTTGTGAAGCGGCCGATAAGGCTGTTAAGgtgaagttccttgcatttttattttctgtgtcagacgatgtttttcttttttgttcttgcag-------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|3766737|gb|AU030847.1|AU030847
EST:     TATTGAAGCCCACGNTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGNTTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: TATTGAAG-CCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|86902955|gb|CI312332.1|CI312332
EST:     ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|58596168|gb|CK006696.1|CK006696
EST:     ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|88906094|gb|CI375166.1|CI375166
EST:     CCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: CCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|29679427|gb|CB675702.1|CB675702
EST:     ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|86535716|gb|CI175922.1|CI175922
EST:     AGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: AGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|33806917|gb|CF329340.1|CF329340
EST:     ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|88996617|gb|CI389283.1|CI389283
EST:     AGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: AGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|163926901|gb|EG710194.1|EG710194
EST:     CCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: CCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|29658401|gb|CB654676.1|CB654676
EST:     ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|88261804|gb|CI365380.1|CI365380
EST:     ATATT-AAGCCACGGTAGTTGC-TGCAAGGCAGCTGACGAAGCCGTTAAG                         A-TATTTT-GACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|88907011|gb|CI376083.1|CI376083
EST:     GTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: GTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|86853833|gb|CI329279.1|CI329279
EST:     GGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAAC-AGTCGGTGGTATTTATCTTGTCACCGCT
genomic: GGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|3760295|gb|C97551.1|C97551
EST:     ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|29677148|gb|CB673423.1|CB673423
EST:     ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|88906214|gb|CI375286.1|CI375286
EST:     ATA-TGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|88248915|gb|CI247999.1|CI247999
EST:     ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|38479186|gb|CF963319.1|CF963319
EST:     ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|33678746|gb|CF306985.1|CF306985
EST:     ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|33679927|gb|CF308166.1|CF308166
EST:     ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|88840190|gb|CI079644.1|CI079644
EST:     AGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: AGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|88828327|gb|CI000436.1|CI000436
EST:     GCAGCTGACGAAGCCGTTAAG                         ATTATTTGGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: GCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|3766835|gb|AU030945.1|AU030945
EST:     TATTGAACCCACCGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTTGGACGCGATTGNACAAGTCGGTGGTATTTATCTTGTCACCGN
genomic: TATTGAAGCCA-CGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTA-TTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGC
EST: gi|29614143|gb|CB619156.1|CB619156
EST:     ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|29679469|gb|CB675744.1|CB675744
EST:     ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|29636842|gb|CB641851.1|CB641851
EST:     ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|29670487|gb|CB666762.1|CB666762
EST:     ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|88906594|gb|CI375666.1|CI375666
EST:     CTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTTTCACCGCT
genomic: CTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|58592702|gb|CF991010.1|CF991010
EST:     ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|29687456|gb|CB683731.1|CB683731
EST:     ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|87029588|gb|CI257383.1|CI257383
EST:     ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|86436645|gb|CI118367.1|CI118367
EST:     TGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: TGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|29616025|gb|CB621037.1|CB621037
EST:     ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|29687056|gb|CB683331.1|CB683331
EST:     ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|86870543|gb|CI320639.1|CI320639
EST:     ATATTGAAGCCACGGTAGTTCCTTCCAAGGCACCTGACGAAGCCGTTAAG                         ATTATTTTTGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|29687803|gb|CB684078.1|CB684078
EST:     ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|86834084|gb|CI340223.1|CI340223
EST:     ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|38469089|gb|CF953220.1|CF953220
EST:     GTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: GTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|27577152|gb|CA999846.1|CA999846
EST:     ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: ATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
EST: gi|58601914|gb|CK012442.1|CK012442
EST:     CGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG                         ATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT
genomic: CGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 63 (upstream exon), 74 (downstream exon)
Score: 55

GTACGTGTCAACCTGCCGAATGGTGACATGGTTGGTCACACTGGTGATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaa ... cctggaacagATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTGATCATGGAAATGCTGAGGATATGGTGAAAAGAAACAAATCTGGCCAGC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTACGTGTCAACCTGCCGAATGGTGACATGGTTGGTCACACTGGTGATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgagcacaaacaagacaaaatatatgcagacagttatttctgcaagtcgtcatgtaccgtaatggtaatccctcccctcctggaacag

- - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA