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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAACTGGACAACATGGCCAAAACCTACCCTGATCGCTTTAAGATCTACTATGTCTTGAATCAGgtgaaccctatgcttctattattttacaagatttgtgtatcaacatcagtactctagatacatatcaatagctttgctggacacagtggtctccaggatt...

Basic information

species Oryza sativa
transcript LOC_Os01g59930.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g59930.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G133213_T01 (Zea mays), 5'ss of exon 7
GAAGAACTGGACAACATGGCCAAAACCTACCCTGATCGCTTTAAGATCTACTATGTCTTGAATCAGgt--gaaccctatgcttctattattttacaag-atttgtgtatcaacat-cagtactctagatacatat---caatagctttgctggacacagtggtctccaggatt
|| || |||||| |||||||||||||||| ||||  |||||||||||||||||||| |||||||||||  |   |  || |||     | |||  | | |||  ||||||||||| |  || |  |  || |      || ||| |||  |    | |  |  |         
GATGAGCTGGACGACATGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtcacattctttagaaaatttgaaggtattactgtatcaacattctttatttcatgtataggaacacattagtttttttttgtaaaaagaacag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|117244284|gb|CT843075.1|CT843075
EST:     TGGCCAAAACCTACCCTGATCGCTTTAAGATCTACTATGTCTTGAATCAG                         CCTCCTGAAGTCTGGAACGGTGGCGTTGGGTTTGTGTCACAGGACATGATT
genomic: TGGCCAAAACCTACCCTGATCGCTTTAAGATCTACTATGTCTTGAATCAGgtgaacccta ... gcttgtgcagCCTCCTGAAGTCTGGAACGGTGGCGTTGGGTTTGTGTCACAGGACATGATT