Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTTTTCTAGCAAAGGCCTTGTGGATACTTTCAGAAAACAGCACCCTAATGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAGgtcagtacatgcgtggactgcttaatttcataaacttgtgtaggatttggttaaattttgcattctaactactaaaagaagaaacaatcctgtcttacaa...

Basic information

species Oryza sativa
transcript LOC_Os01g58690.3
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88265285|gb|CI369059.1|CI369059
EST:     GCTTTCGG-TATACCTTCTGGGGTGAAAATCAGGCGCATAACCAACAAAG                         G-TGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC
genomic: GCTGTCGGCTATACCTTCTGGGGTGAAAATCA-GCGCATAACCAACAAAGgtcagtacat ... catctaacagGTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC
EST: gi|86430432|gb|CI082855.1|CI082855
EST:     TGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAG                         GTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATGACCGACAAGGTTC
genomic: TGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAGgtcagtacat ... catctaacagGTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC
EST: gi|86420470|gb|CI056459.1|CI056459
EST:     TGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAG                         GTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC
genomic: TGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAGgtcagtacat ... catctaacagGTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC
EST: gi|66928154|gb|CX115002.1|CX115002
EST:     TGCTGTCGGCTATACCTTCTGGGGTG-AAATCAGCGCATAACCAACAAAG                         GTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC
genomic: TGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAGgtcagtacat ... catctaacagGTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC
EST: gi|66927262|gb|CX114110.1|CX114110
EST:     GCTGTCGG-TAATACCTTCTGGGGTGAAAATCAGGGCATA-CCAACAAAT                         GTGGGAGATTAGAATTACTT-CTTGGGTCGGAATCTATTACCG
genomic: GCTGTCGGCTA-TACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAGgtcagtacat ... catctaacagGTTGGCGATTAGA-TTACTTTCTTGCGTCGGAATCTATTACCG
EST: gi|8528070|gb|AU092885.1|AU092885
EST:     TGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAG                         GTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC
genomic: TGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAGgtcagtacat ... catctaacagGTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC
EST: gi|86536931|gb|CI177137.1|CI177137
EST:     TGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAG                         GTTGGCGATTTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTT
genomic: TGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAGgtcagtacat ... catctaacagGTTGGCGA-TTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTT
EST: gi|88267158|gb|CI379093.1|CI379093
EST:     TTCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAG                         GTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC
genomic: TGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAGgtcagtacat ... catctaacagGTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC
EST: gi|88481861|gb|CI419132.1|CI419132
EST:     TGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAG                         GTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC
genomic: TGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAGgtcagtacat ... catctaacagGTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC
EST: gi|86842271|gb|CI335201.1|CI335201
EST:     CTTCTGGGGTGAAAATCAGCGCATAACCAACAAAG                         GTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC
genomic: CTTCTGGGGTGAAAATCAGCGCATAACCAACAAAGgtcagtacat ... catctaacagGTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC
EST: gi|88835940|gb|CI371045.1|CI371045
EST:     TGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAG                         GTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC
genomic: TGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAGgtcagtacat ... catctaacagGTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 46 (upstream exon), 30 (downstream exon)
Score: 3

AACTTTTCTAGCAAAGGCCTTGTGGATACTTTCAGAAAACAGCACCCTAATGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAGgtcagtacat ... catctaacagGTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTCATGATTCATACATTCTTCCTGATGTATCATTCAGCGACCACAGTCCAAT




<











<


<