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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTTTTCTAGCAAAGGCCTTGTGGATACTTTCAGAAAACAGCACCCTAATGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAGgtcagtacatgcgtggactgcttaatttcataaacttgtgtaggatttggttaaattttgcattctaactactaaaagaagaaacaatcctgtcttacaa...

Basic information

species Oryza sativa
transcript LOC_Os01g58690.2
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88265285|gb|CI369059.1|CI369059
EST:     GCTTTCGG-TATACCTTCTGGGGTGAAAATCAGGCGCATAACCAACAAAG                         G-TGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC
genomic: GCTGTCGGCTATACCTTCTGGGGTGAAAATCA-GCGCATAACCAACAAAGgtcagtacat ... catctaacagGTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC
EST: gi|86430432|gb|CI082855.1|CI082855
EST:     TGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAG                         GTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATGACCGACAAGGTTC
genomic: TGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAGgtcagtacat ... catctaacagGTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC
EST: gi|86420470|gb|CI056459.1|CI056459
EST:     TGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAG                         GTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC
genomic: TGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAGgtcagtacat ... catctaacagGTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC
EST: gi|66928154|gb|CX115002.1|CX115002
EST:     TGCTGTCGGCTATACCTTCTGGGGTG-AAATCAGCGCATAACCAACAAAG                         GTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC
genomic: TGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAGgtcagtacat ... catctaacagGTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC
EST: gi|8528070|gb|AU092885.1|AU092885
EST:     TGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAG                         GTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC
genomic: TGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAGgtcagtacat ... catctaacagGTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC
EST: gi|86536931|gb|CI177137.1|CI177137
EST:     TGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAG                         GTTGGCGATTTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTT
genomic: TGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAGgtcagtacat ... catctaacagGTTGGCGA-TTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTT
EST: gi|88267158|gb|CI379093.1|CI379093
EST:     TTCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAG                         GTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC
genomic: TGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAGgtcagtacat ... catctaacagGTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC
EST: gi|88481861|gb|CI419132.1|CI419132
EST:     TGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAG                         GTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC
genomic: TGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAGgtcagtacat ... catctaacagGTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC
EST: gi|86842271|gb|CI335201.1|CI335201
EST:     CTTCTGGGGTGAAAATCAGCGCATAACCAACAAAG                         GTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC
genomic: CTTCTGGGGTGAAAATCAGCGCATAACCAACAAAGgtcagtacat ... catctaacagGTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC
EST: gi|88835940|gb|CI371045.1|CI371045
EST:     TGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAG                         GTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC
genomic: TGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAGgtcagtacat ... catctaacagGTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACTTTTCTAGCAAAGGCCTTGTGGATACTTTCAGAAAACAGCACCCTAATGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAGgtcagtacatgcgtggactgcttaatttcataaacttgtgtaggatttggttaaattttgcattctaactactaaaagaagaaacaatcctgtcttacaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaa