Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCAAGTCGCACAAGCGGTTCGCCGGCTCGTTCCGCAAGTACTGCGACCTCGTCGACAGCGCCAGCCTCTACAGCACCAACACCATCGCCGGCGCGAAGgtattattcctaacccgttcaccgatcgattccccgtgtgatgataccgtgctgtgtgtttgagacgttgtacgcgtgcgtatatatgtgcgcgtgcag

Basic information

species Oryza sativa
transcript LOC_Os01g56764.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g56764.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G047262_T01 (Zea mays), 5'ss of exon 7
GCTCAAGTCGCACAAGCGGTTCGCCGGCTCGTTCCGCAAGTACTGCGACCTCGTCGACAGCGCCAGCCTCTACAGCACCAACACCATCGCCGGCGCGAAGgtattattcctaacccgttcaccgat--cgattccc--cgtgtgatgataccgtgctgtgt--gtttgagacgttgtacgcgtgcgtatatatgtgcgcgtgcag
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||| |||||| |||||||||||||| |||||||||||||| ||||| |  | | | |  |      | ||  |||||| |  |||||| |      | |||   |  ||| ||| || |    |  || || | |  |           
GCTCAAGTCGCACAAGCGCTTCGCCGGCGCGTTCCGCAAGTACTGCGACCTCGTGGACAACGCCAGGCTCTACAGCACCAATACCATCGCCGGCGCAAAGgtctggtcctttaggcacgagtccatttcgattctcagcgtgtgttatccatgagctacctaggttcgaggcgcttcgtg-atgtgtgtgtcag-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86484797|gb|CI127430.1|CI127430
EST:     TCGTCGACAGCGCCAGCCTCTACAGCACCAACACCATCGCCGGCGCGAAT                         TTGATCGGGTGGAAGGACGTGGGGAGCAGGCTGCTGGTGGACGTGGAGGAG
genomic: TCGTCGACAGCGCCAGCCTCTACAGCACCAACACCATCGCCGGCGCGAAGgtattattcc ... gcgcgtgcagTTGATCGGGTGGAAGGACGTGGGGAGCAGGCTGCTGGTGGACGTGGAGGAG
EST: gi|86499917|gb|CI142550.1|CI142550
EST:     TCGTCGACAGCGCCAGCCTCTACAGCACCAACACCATCGCCGGCGCGAAG                         TTGATCGGGTGGAAGGACGTGGGGAGCAGGCTGCTGGTGGACGTGGAGGAG
genomic: TCGTCGACAGCGCCAGCCTCTACAGCACCAACACCATCGCCGGCGCGAAGgtattattcc ... gcgcgtgcagTTGATCGGGTGGAAGGACGTGGGGAGCAGGCTGCTGGTGGACGTGGAGGAG
EST: gi|87015918|gb|CI279670.1|CI279670
EST:     TCGTCGACAGCGCCAGCCTCTACAGCACCAACACCATCGCCGGCGCGAAG                         TTGATCGGGTGGAAGGACGTGGGGAGCAGGCTGCTGGTGGACGTGGAGGAG
genomic: TCGTCGACAGCGCCAGCCTCTACAGCACCAACACCATCGCCGGCGCGAAGgtattattcc ... gcgcgtgcagTTGATCGGGTGGAAGGACGTGGGGAGCAGGCTGCTGGTGGACGTGGAGGAG