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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGATCGTGCTGATGTTGAAGGAAATGCTCAAAATGGGCTAGTTGTCAGGTTGTCTTTTGCATCGCTATTTGACGCTCTTGGCACgtaagtaacacacttcatcatgctgagcggtatgatcatactgttacttgttagatgtatagaagtttgccaagtgtgattctaattaaaacaatgaaat...

Basic information

species Oryza sativa
transcript LOC_Os01g56630.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g56630.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G079389_T01 (Zea mays), 5'ss of exon 7
ATGATCGTGCTGATGTTGAAGGAAATGCTCAAAATGGGCTAGTTGTCAGGTTGTCTTTTGCATCGCTATTTGACGCTCTTGGCACgtaagtaaca--cacttcatcatgctgagcggtatgatcatactgttacttgttagatgtatag-aagtttgccaa-gtgtg-attctaattaaaacaatgaaat
|||||||||||||||||||||||||||||||| || | |  |||||||||||||||||||||||| | ||||| ||| |||| | ||| ||||||  ||| |  | || || |      ||  |||| | | | |  |||| || ||   || ||||  ||  ||||  |||    |||||   |     
ATGATCGTGCTGATGTTGAAGGAAATGCTCAAGATCGACCTGTTGTCAGGTTGTCTTTTGCATCGTTGTTTGATGCTTTTGGAAGgtaggtaacagtcacctactgatccttaagatactgcacatattttaattcattagctgcatgtcaaatttggaaatatgtgtgttcgttctaaaatttt-----

upper sequence: LOC_Os01g56630.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G078576_T01 (Zea mays), 5'ss of exon 7
ATGATCGTGCTGATGTTGAAGGAAATGCTCAAAATGGGCTAGTTGTCAGGTTGTCTTTTGCATCGCTATTTGACGCTCTTGGCACgtaagtaaca--cacttcatcatgctgagcggtatgatcatactgttacttgttagatgtatagaagtttgccaagt-gtgattctaattaaaacaatgaaat
||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||| | | ||||| |||||||| | || || ||    ||  |  | || || |      || ||||| | | | |  |||| || ||   |  || | || | ||  |  |  ||| || | |     
ATGATCGTGCTGATGTTGAAGGAAATGCTCAAAATGGACCTGTTGTCAGGTTGTCTTTTGCATTGTTGTTTGATGCTCTTGGAAGgtgagaaatgatcatctgctgatccttaaaatactgctcatattttaattcattagctgcatgtcaaatttcaaaatagttgtgttcgttataaaattat---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29628456|gb|CB633467.1|CB633467
EST:     GGGCTAGTTGTCAGGTTGTCTTTTGCATCGCTATTTGACGCTCTTGGCAC                         ATGCTTAAAAGATGAGAGCTCGGTTCTACTGCTCTATTCTTTGGTCCATGG
genomic: GGGCTAGTTGTCAGGTTGTCTTTTGCATCGCTATTTGACGCTCTTGGCACgtaagtaaca ... atccatgcagATGCTTAAAAGATGAGAGCTCGGTTCTACTGCTCTATTCTTTGGTCCATGG
EST: gi|58693104|gb|CK081791.1|CK081791
EST:     GGGCTAGTTGTCAGGTTGTCTTTTGCATCGCTATTTGACGCTCTTGGCAC                         ATGCTTAAAAGATGAGAGCTCGGTTCTACTGCTCTATTCTTTGGTCCATGG
genomic: GGGCTAGTTGTCAGGTTGTCTTTTGCATCGCTATTTGACGCTCTTGGCACgtaagtaaca ... atccatgcagATGCTTAAAAGATGAGAGCTCGGTTCTACTGCTCTATTCTTTGGTCCATGG
EST: gi|58659682|gb|CK048362.1|CK048362
EST:     GGGCTAGTTGTCAGGTTGTCTTTTGCATCGCTATTTGACGCTCTTGGCAC                         ATGCTTAAAAGATGAGAGCTCGGTTCTACTGCTCTATTCTTTGGTCCATGG
genomic: GGGCTAGTTGTCAGGTTGTCTTTTGCATCGCTATTTGACGCTCTTGGCACgtaagtaaca ... atccatgcagATGCTTAAAAGATGAGAGCTCGGTTCTACTGCTCTATTCTTTGGTCCATGG