1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ACAACCTGAGCTTTTGCAGAAGCTGTCTGAAGGAACCTTCACTCTGAGACTTATGTATGAGCAGTTCCAGAACATCTTGAAAATGGGTCCTATTGGCCAGgttagcaacatcttttacttgcggtgaaatgaaacgtacagctcatgatgtctgtttacttgtttaattgacatgcccagggttcatttcttttaagattatcacagcacgcttttaaatctggattggtgtgtttgcag
species | Oryza sativa |
transcript | LOC_Os01g56600.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTATGTATGAGCAGTTCCAGAACATCTTGAAAATGGGTCCTATTGGCCAG GTTTTCTCAATGTTGCCTGNATTTAGTTCTGAATTGATGCCAAAGGGACATEST: gi|88243199|gb|CI244321.1|CI244321
genomic: TTATGTATGAGCAGTTCCAGAACATCTTGAAAATGGGTCCTATTGGCCAGgttagcaaca ... gtgtttgcagGTTTTCTCAATGTTGCCTGGATTTAGTTCTGAATTGATGCCAAAGGGACAT
EST: TCCTATTGGCCAG GTTTTCTCAATGTTGCCTGGATTTAGTTCTGAATTGATGCCAAAGGGACATEST: gi|3763619|gb|AU030371.1|AU030371
genomic: TCCTATTGGCCAGgttagcaaca ... gtgtttgcagGTTTTCTCAATGTTGCCTGGATTTAGTTCTGAATTGATGCCAAAGGGACAT
EST: TTATGTATGAGCAGTTCCAGAACATCTTGAAAATGGGTCCTATTGGCCAG GTTTTCTCAATGTTGCCTGGATTTAGTTCTGAATTGATGCCAAAGGGACAT
genomic: TTATGTATGAGCAGTTCCAGAACATCTTGAAAATGGGTCCTATTGGCCAGgttagcaaca ... gtgtttgcagGTTTTCTCAATGTTGCCTGGATTTAGTTCTGAATTGATGCCAAAGGGACAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAACCTGAGCTTTTGCAGAAGCTGTCTGAAGGAACCTTCACTCTGAGACTTATGTATGAGCAGTTCCAGAACATCTTGAAAATGGGTCCTATTGGCCAGgttagcaacatcttttacttgcggtgaaatgaaacgtacagctcatgatgtctgtttacttgtttaattgacatgcccagggttcatttcttttaagattatcacagcacgcttttaaatctggattggtgtgtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG