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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCAGGTCCATTATTTTGATGCAGACGCAGTTACATTGGCAAGgtatctgtctttctagattctattgatcagctcgctatctccatgtcttctttaacaacaaaagaaatgtcatgtctttgctgatgaacttggtttcttttcctacatggccag

Basic information

species Oryza sativa
transcript LOC_Os01g56270.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88518752|gb|CI445495.1|CI445495
EST:     TTTCAGGTCCATTATTTTGATGCAGACGCAGTTACATTGGCAAG                         GTGGCATCAGGGTGTTACTGTTTCTTTCGGCAAGCGAAAGTGAACAAGCAG
genomic: TTTCAGGTCCATTATTTTGATGCAGACGCAGTTACATTGGCAAGgtatctgtct ... acatggccagGTGGCATCGGGGTGTTACTGTTTCTTTCGGCAAGCGAAAGTGAACAAGCAG
EST: gi|86413930|gb|CI068137.1|CI068137
EST:     TTTCAGGTCCATTATTTTGATGCAGACGCAGTTACATTGGCAAG                         GTGGCATCGGGGTGTTACTGTTTCTTTCGGCAAGCGAAAGTGAACAAGCAG
genomic: TTTCAGGTCCATTATTTTGATGCAGACGCAGTTACATTGGCAAGgtatctgtct ... acatggccagGTGGCATCGGGGTGTTACTGTTTCTTTCGGCAAGCGAAAGTGAACAAGCAG
EST: gi|89195388|gb|CI051501.1|CI051501
EST:     TTTCAGGTCCATTATTTTGATGCAGACGCAGTTACATTGGCAAG                         GTGGCATCAGGGTGTTACTGTTTCTTTCGGCAAGCGAAAGTGAACAAGCAG
genomic: TTTCAGGTCCATTATTTTGATGCAGACGCAGTTACATTGGCAAGgtatctgtct ... acatggccagGTGGCATCGGGGTGTTACTGTTTCTTTCGGCAAGCGAAAGTGAACAAGCAG