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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATTATATGTTACCATGTTCCCCTGCAATGAGTGTGCTAAGATTATTATCCAGgtttgtttctggatagaatcagtatcttaaagttaaaatgtatttttgtcatcacctatttaaattactctcactttgaggaaatgcattataacaccat...

Basic information

species Oryza sativa
transcript LOC_Os01g55974.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g55974.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G124091_T04 (Zea mays), 5'ss of exon 7
AAATTATATGTTACCATGTTCCCCTGCAATGAGTGTGCTAAGATTATTATCCAGgtttgtttctggatagaatcagtatcttaaagttaaaatgtatttttgtcatcacctatttaaatt-actctcactttgaggaaatgcattataacaccat----
||||| ||||| ||||||||||| |||||||| ||||| ||||||||||| ||||||||| |||   ||| ||||   | |||  ||||   |     |||    |     ||||||||| || | |||    | ||  |  |||   || |  |    
AAATTGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAGgtttgtctctttgtaggatcatggtgtta--gttagggttacagtttacggtagtgcatttaaatttacccccac---aatgacctatatttccactcattttgt

upper sequence: LOC_Os01g55974.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA05G03380.1 (Glycine max), 5'ss of exon 7
AAATTATATGTTACCATGTTCCCCTGCAATGAGTGTGCTAAGATTATTATCCAGgtttgtt-tctggatagaatcagtatcttaaa-gttaaaatgtatttttgtcatcacctatttaaattactctcactttgaggaaatgcattataacaccat
    ||||||| |||||||| || |||||||| ||||||||||| || ||||||||| ||   || | |    |     | | | | |||   ||| ||  || |    | |   |      | | |   |   || | ||   || ||  |  | 
CGGCTATATGTGACCATGTTTCCGTGCAATGAATGTGCTAAGATCATAATCCAGgttggtaaccttgttctgcttgacgtataatatgttgtgatgaatcattctgcagatcagatctg--cattttatatcaaagaatataacttttatgagaaa

upper sequence: LOC_Os01g55974.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA17G13950.1 (Glycine max), 5'ss of exon 7
AAATTATATGTTACCATGTTCCCCTGCAATGAGTGTGCTAAGATTATTATCCAGgtttgtttctggatagaatcagtatcttaaagttaaaatgtatttttgtcatcacctatttaaattactctcactttgaggaaatgcattataacaccat--------
    ||||||| |||||||| ||||||||||| ||||||||||| || ||||||||| ||  |    |    || |   ||| ||||  |  | |   |    |||     |  | |  |   |    | | |  ||| |||| |||  ||  |        
CGGCTATATGTGACCATGTTTCCCTGCAATGAATGTGCTAAGATCATAATCCAGgttggtaaccttgt----tctg---cttcaagtatatgttttgatgaaccattttgcagatgaggtctgcattttcttaacaaa-gcatcatataacttttatgagag