Sequence
atgc intronic sequence ATGC exonic sequenceTTAGCAAATGTAATGGGCCGTTTCCAATGGTTGACATGCCCAAGAAAAgtgagatatcatttcctttggaatgtgattgtgagttgtctacacaatttgctactgtgattcttttcttatatttatcacgcaaatgatttcag
Basic information
species | Oryza sativa |
transcript | LOC_Os01g55360.4 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g55360.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM5G825110_T01 (Zea mays), 5'ss of exon 7
TTAGCAAATGTAATGGGCCGTTTCCAATGGTTGACATGCCCAAGAAAAgtgagatatcatttcctttggaatgtgattgtga--gttgtctacacaatttgctactgtgattcttttcttatatttatcacgcaaatgatttcag
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TTAGCAAATGTAATGGGCCGTTTCCAATGGTTGACATGCCCAAGAAAGgttacgtagattttcttcagaaatcagaatatggttgttgtatggctaagttgttgttgtg------ttgctaatttttttatgcaaataatttcag
upper sequence: LOC_Os01g55360.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G452529_T02 (Zea mays), 5'ss of exon 7
TTAGCAAATGTAATGGGCCGTTTCCAATGGTTGACATGCCCAAGAAAAgtgagatatcatttcctttggaatgtgattgtgagttgtctacacaatttgctactgtgattcttttcttatatttatcacgcaaatgatttcag
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TTAGCAAATGTAATGGGCCATTCGCAATGGTTGACATGCCCAAGAAAGgttacatag-attttcttcagaatatgattgt----tgtatggctaagttgctgttgcg------ttgctaatttttttatgcacataatttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58663757|gb|CK052443.1|CK052443EST: TTAGCAAATGTAATGGGCCGTTTCCAATGGTTGACATGCCCAAGAAAA GACCTGTCGACAGGGTGGCTTTGTTGTGACCCTGGTCCTATGTTTAAGCCA
genomic: TTAGCAAATGTAATGGGCCGTTTCCAATGGTTGACATGCCCAAGAAAAgtgagatatc ... atgatttcagGACCTGTCGACAGGGTGGCTTCGTTGTGACCCTGGTCCTATGTTTAAGCCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTAGCAAATGTAATGGGCCGTTTCCAATGGTTGACATGCCCAAGAAAAgtgagatatcatttcctttggaatgtgattgtgagttgtctacacaatttgctactgtgattcttttcttatatttatcacgcaaatgatttcag
- - - - - - - - - - - - - - - - - - - - AAGAAA