1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTGCTTCTACTGTCATTTGTTGTTACAATCGCCTTCGCCATCCTCATCTGGATTGGTAGAGGAGAAAATCCTATTGATTCATCTCTATTGAAAAGGgtatgatggattagaaattctttatgtttttatgtgctgcatttcctatgatatatcaacttattttttatcaatataatagcattgatgtgttgcaagt...
species | Oryza sativa |
transcript | LOC_Os01g54784.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TATTGATTCATCTCTATTGAAAAGG GTTTACTTGGATGTATTCTCAGTAGTTGTTCTTGTACTTGGTGGTGCGCTGEST: gi|58692115|gb|CK080802.1|CK080802
genomic: TATTGATTCATCTCTATTGAAAAGGgtatgatgga ... tattttgtagGTTTACTTGGATGTATTCTCAGTAGTTGTTCTTGTACTTGGTGGTGCGCTG
EST: TCTGGATTGGTAGAGGAGAAAATCCTATTGATTCATCTCTATTGAAAAGG GTTTACTTGGATGTATTCTCAGTAGTTGTTCTTGTACTTGGTGGCGCGCTGEST: gi|29640875|gb|CB645882.1|CB645882
genomic: TCTGGATTGGTAGAGGAGAAAATCCTATTGATTCATCTCTATTGAAAAGGgtatgatgga ... tattttgtagGTTTACTTGGATGTATTCTCAGTAGTTGTTCTTGTACTTGGTGGTGCGCTG
EST: TCTGGATTGGTAGAGGAGAAAATCCTATTGATTCATCTCTATTGAAAAGG GTTTACTTGGATGTATTCTCAGTAGTTGTTCTTGTACTTGGTGGTGCGCTGEST: gi|396941229|gb|HO188438.1|HO188438
genomic: TCTGGATTGGTAGAGGAGAAAATCCTATTGATTCATCTCTATTGAAAAGGgtatgatgga ... tattttgtagGTTTACTTGGATGTATTCTCAGTAGTTGTTCTTGTACTTGGTGGTGCGCTG
EST: TCTGGATTGGTAGAGGAGAAAATCCTATTGATTCATCTCTATTGAAAAGG GTTTACTTGGATGTATTCTCAGTAGTTGTTCTTGTACTTGGTGGCGCGCTG
genomic: TCTGGATTGGTAGAGGAGAAAATCCTATTGATTCATCTCTATTGAAAAGGgtatgatgga ... tattttgtagGTTTACTTGGATGTATTCTCAGTAGTTGTTCTTGTACTTGGTGGTGCGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCTTCTACTGTCATTTGTTGTTACAATCGCCTTCGCCATCCTCATCTGGATTGGTAGAGGAGAAAATCCTATTGATTCATCTCTATTGAAAAGGgtatgatggattagaaattctttatgtttttatgtgctgcatttcctatgatatatcaacttattttttatcaatataatagcattgatgtgttgcaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA