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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTATAGTTCAAAGCTGGCATTGCAGGCTCCATTGTCATTTTGGCCTCGCTGGGCTTATGAAATGTACGATTCATATTCCCTTGCTCGCAGAGTGGCAGgtattgaattatttcactacagctatttcaatccgttttgtcttgtattcatgcattctttagccaaataatattctttcccactggctaacatgtcatttgttactatgattaagatgtgatgtatgcatgacattaaattggttttgtggcag

Basic information

species Oryza sativa
transcript LOC_Os01g54040.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g54040.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G477200_T01 (Zea mays), 5'ss of exon 7
--GCTTATAGTTCAAAGCTGGCATTGCAGGCTCCATTGTCATTTTGGCCTCGCTGGGCTTATGAAATGTACGATTCATATTCCCTTGCTCGCAGAGTGGCAGgtattgaattatttcactacagctatttcaatccgttttgtcttgtattcatgcattctttagccaaataatattctttcc--cactggctaacatgtcatttgttactatgattaagatgtgatgtatgcatgacattaaattggttttgtggcag
    | | |    |||    || |  ||||||||||||||||||||||||| |||||||||||| ||||| ||||| ||||| ||| |  | ||||  |||||||     ||||||| | || |     ||  |    ||| ||||| |||   |||  |   |   |  | |   || || |     | | |||| |    | | ||  | |     | | ||                                   
TACTTCACAACGAAAAAT--GCTTCACAGGCTCCATTGTCATTTTGGCCTCACTGGGCTTATGAGATGTATGATTCGTATTCACTTTCCAGGAGAGCTGCAGgtaccatgttatttctccactgtccactctttgtaatttctcttg-attgtagcaaacggaatttatgttactctcctttcattgattgttaacttcctgtatttttttctctcggaaacgtag---------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58671713|gb|CK060399.1|CK060399
EST:     CTGGGCTTATGAAATGTACGATTCATATTCCCTTGCTCGCAGAGTGGCAG                         ATTTGTGGAGACAAATAGTTGTAAATCCAAGCATGGATGATTATGTGAGAA
genomic: CTGGGCTTATGAAATGTACGATTCATATTCCCTTGCTCGCAGAGTGGCAGgtattgaatt ... tttgtggcagATTTGTGGAGACAAATAGTTGTAAATCCAAGCATGGATGATTATGTGAGAA