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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCACCAATAAGGAATGGTACTGGATTGCAACTGGCGCCCTTCTAGGGTTCACCATTCTGTTCAACGTGTTATTCTCGCTATCACTTATGTACCTGAACCgtaagtagctacactgtacttagtaataacctgttatgagttgcatctgacaacagattatttccttaacttcgccgattggccttttcaagtgagcagg...

Basic information

species Oryza sativa
transcript LOC_Os01g52560.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g52560.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G000614_T01 (Zea mays), 5'ss of exon 10
TTCACCAATAAGGAATGGTACTGGATTGCAACTGGCGCCCTTCTAGGGTTCACCATTCTGTTCAACGTGTTATTCTCGCTATCACTTATGTACCTGAACCgtaagtagctacactgtac-ttagtaataacctgt-tatgagttgcatctgac------aacagattatttccttaacttcgccgattggccttttcaagtgagcagg----------------------------------------------------------
||||||   |||||||||||||||||||| ||||| || ||| |||| |||||  |||||||||| ||||||||| | || ||||||||||||||||| |||||||| |||| ||  || ||| |||||   ||  |      |||   | |       | |   |  | | |||  ||  ||  |        ||| | ||||                                                              
TTCACCGGCAAGGAATGGTACTGGATTGCTACTGGTGCACTTTTAGGTTTCACTGTTCTGTTCAATGTGTTATTCACACTGTCACTTATGTACCTGAATCgtaagtatctactctacacattaataatatgttgcgtgcagtctgctctttattttcttatcctgtattgttcttgtctatgctaaactaatgcttccattgagtcataacttggtcatttgatattggtaccttactagactgattattctgctccttgaattag