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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTGGTGGTTTCTTCATTTTGCTACCTCCAATTTTTTCCAATGCCATCTGATGAAAACGgtatgcttcatagttcagactacttttcttcatgattattgcagagatgaaaatcacccccaaagggtcattttgagtagtacaatttgatactgtattt...

Basic information

species Oryza sativa
transcript LOC_Os01g49820.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g49820.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G077187_T01 (Zea mays), 5'ss of exon 7
GGTTGGTGGTTTCTTCATTTTGCTACCTCCAATTTTTTCCAATGCCATCTGATGAAAACGgtatgcttcatagttcagactacttttcttcatgattattgcagagatgaaaatcacccccaaagggtcattttgagtagtacaatttgatactgtattt-
||||   |||| ||||  |||||||||| || ||||||||| | |||||||||||||| |||||||||| || ||| | |    ||   |  || ||| |     | | |   |  |          | ||  ||  || |    |  |    | |||   
GGTTCACGGTTGCTTCCATTTGCTACCTGCAGTTTTTTCCACTACCATCTGATGAAAATGgtatgcttc-taattctgtcctgattaaattctgcttaatcttctggtcatctttgctgatctcaaattatagtggatacttggttgggggtgtctatcct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88273527|gb|CI393933.1|CI393933
EST:     TTCTTCATTTTGCTACCTCCAATTTTTTCCAATGCCATCTGATGAAAACG                         GATTATGGCCTCACGCATACGCCCGGCACATTCTCAACCCTGATCAGCTGG
genomic: TTCTTCATTTTGCTACCTCCAATTTTTTCCAATGCCATCTGATGAAAACGgtatgcttca ... tcgatgacagGATTATGGCCTCACGCATACGCCCGGCACATTCTCAACCCTGATCAGCTGG
EST: gi|88275671|gb|CI396275.1|CI396275
EST:     ATCTGATGAAAACG                         GATTATGGCCTCACGCATACGCCCGGCACATTCTCAACCCTGATCAGCTGG
genomic: ATCTGATGAAAACGgtatgcttca ... tcgatgacagGATTATGGCCTCACGCATACGCCCGGCACATTCTCAACCCTGATCAGCTGG
EST: gi|88516696|gb|CI444350.1|CI444350
EST:     TGCCATCTGATGAAAACG                         GATTATGGCCTCACGCATACGCCCGGCACATTCTCAACCCTGATCAGCTGG
genomic: TGCCATCTGATGAAAACGgtatgcttca ... tcgatgacagGATTATGGCCTCACGCATACGCCCGGCACATTCTCAACCCTGATCAGCTGG
EST: gi|33687573|gb|CF315812.1|CF315812
EST:     TTCTTCATTTTGCTACCTCCAATTTTTTCCAATGCCATCTGATGAAAACG                         GATTATGGCCTCACGCATACGCCCGGCACATTCTCAACCCTGATCAGCTGG
genomic: TTCTTCATTTTGCTACCTCCAATTTTTTCCAATGCCATCTGATGAAAACGgtatgcttca ... tcgatgacagGATTATGGCCTCACGCATACGCCCGGCACATTCTCAACCCTGATCAGCTGG
EST: gi|88275981|gb|CI396585.1|CI396585
EST:     TTTGCTACCTCCAATTTTTTCCAATGCCATCTGATGAAAACG                         GATTATGGCCTCACGCATACGCCCGGCACATTCTCAACCCTGATCAGCTGG
genomic: TTTGCTACCTCCAATTTTTTCCAATGCCATCTGATGAAAACGgtatgcttca ... tcgatgacagGATTATGGCCTCACGCATACGCCCGGCACATTCTCAACCCTGATCAGCTGG
EST: gi|27547046|gb|CA765107.2|CA765107
EST:     TTCTTCATTTTGCTACCTCCAATTTTTTCCAATGCCATCTGATGAAAACG                         GATTATGGCCTCACGCATACGCCCGGCACATTCTCAACCCTGATCAGCTGG
genomic: TTCTTCATTTTGCTACCTCCAATTTTTTCCAATGCCATCTGATGAAAACGgtatgcttca ... tcgatgacagGATTATGGCCTCACGCATACGCCCGGCACATTCTCAACCCTGATCAGCTGG
EST: gi|25807069|gb|CA763030.1|CA763030
EST:     TTCTTCATTTTGCTACCTCCAATTTTTTCCAATGCCATCTGATGAAAACG                         GATTATGGCCTCACGCATACGCCCGGCACATTTTCAACCCTGATCAGCTGG
genomic: TTCTTCATTTTGCTACCTCCAATTTTTTCCAATGCCATCTGATGAAAACGgtatgcttca ... tcgatgacagGATTATGGCCTCACGCATACGCCCGGCACATTCTCAACCCTGATCAGCTGG
EST: gi|5771042|gb|AU077931.1|AU077931
EST:     TTCTTCATTTTGCTACCTCCAATTTTTTCCAATGCCATCTGATGAAAACG                         GATTATGGCCTCACGCATACGCCCGGCACATTCTCAACCCTGATCAGCTGG
genomic: TTCTTCATTTTGCTACCTCCAATTTTTTCCAATGCCATCTGATGAAAACGgtatgcttca ... tcgatgacagGATTATGGCCTCACGCATACGCCCGGCACATTCTCAACCCTGATCAGCTGG