1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCTGAGTACAATGCCATTTCATATACCCAACAAATGAGGTTGAGGACAGCAGTTGAACTTTTGAAGGCTACAAAGGACATAGAATCCCAGTTGGAGAAGgtcagtgttgcttttaccttatctttttaagcggttgaattcccttttctaaattattcagtgcctggaagcaaccattgccatcacttcttttgaaaaatagttacaaatgcgaaaccctctttacttgacag
species | Oryza sativa |
transcript | LOC_Os01g49380.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAGTTGAACTTTTGAAGGCTACAAAGGACATAGAATCCCAGTTGGAGAAG ATTTGTTCCCCATTGCTGATTCTCCACGGAGCAGCAGACTTGGTTACCGACEST: gi|86835208|gb|CI346683.1|CI346683
genomic: CAGTTGAACTTTTGAAGGCTACAAAGGACATAGAATCCCAGTTGGAGAAGgtcagtgttg ... tacttgacagATTTGTTCCCCATTGCTGATTCTCCACGGAGCAGCAGACTTGGTTACCGAC
EST: CAGTTGAACTTTTGAAGGCTACAAAGGACATAGAATCCCAGTTGGAGAAG ATTTGTTCCCCATTGCTGATTCTCCACGGAGCAGCAGACTTGGGTACCGACEST: gi|27548274|gb|CA767490.2|CA767490
genomic: CAGTTGAACTTTTGAAGGCTACAAAGGACATAGAATCCCAGTTGGAGAAGgtcagtgttg ... tacttgacagATTTGTTCCCCATTGCTGATTCTCCACGGAGCAGCAGACTTGGTTACCGAC
EST: CAGTTGAACTTTTGAAGGCTACAAAGGACATAGAATCCCAGTTGGAGAAG ATTTGTTCCCCATTGCTGATTCTCCACGGAGCAGCAGACTTGGTTACCGACEST: gi|3107506|gb|D43246.1|D43246
genomic: CAGTTGAACTTTTGAAGGCTACAAAGGACATAGAATCCCAGTTGGAGAAGgtcagtgttg ... tacttgacagATTTGTTCCCCATTGCTGATTCTCCACGGAGCAGCAGACTTGGTTACCGAC
EST: CAGTTGAACTTTTGAAGGCTACAAAGGACATAGAATCCCAGTTGGAGAAG ATTTGTTCCCCATTGCTGATTCTCCACGGAGCAGCAGACTTGGTTACCGACEST: gi|3107548|gb|D43288.1|D43288
genomic: CAGTTGAACTTTTGAAGGCTACAAAGGACATAGAATCCCAGTTGGAGAAGgtcagtgttg ... tacttgacagATTTGTTCCCCATTGCTGATTCTCCACGGAGCAGCAGACTTGGTTACCGAC
EST: CAGTTGAACTTTTGAAGGCTACAAAGGACATAGNATCCCAGTTGGAGAAG ATTTGTTCCCCATTGCTGATTCTCCACGGAGCAGCAGACTTGGTTACCGACEST: gi|3107521|gb|D43261.1|D43261
genomic: CAGTTGAACTTTTGAAGGCTACAAAGGACATAGAATCCCAGTTGGAGAAGgtcagtgttg ... tacttgacagATTTGTTCCCCATTGCTGATTCTCCACGGAGCAGCAGACTTGGTTACCGAC
EST: CAGTTGAACTTTTGAAGGCTACAAAGGACATAGCATCCCAGTTGGAGAAG ATTTGTTCCCCATTGCTGATTCTCCACGGAGCAGCAGACTTGGTTACCGAC
genomic: CAGTTGAACTTTTGAAGGCTACAAAGGACATAGAATCCCAGTTGGAGAAGgtcagtgttg ... tacttgacagATTTGTTCCCCATTGCTGATTCTCCACGGAGCAGCAGACTTGGTTACCGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGAGTACAATGCCATTTCATATACCCAACAAATGAGGTTGAGGACAGCAGTTGAACTTTTGAAGGCTACAAAGGACATAGAATCCCAGTTGGAGAAGgtcagtgttgcttttaccttatctttttaagcggttgaattcccttttctaaattattcagtgcctggaagcaaccattgccatcacttcttttgaaaaatagttacaaatgcgaaaccctctttacttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA