1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTTGAAGATGAAGCTTCCACGGTATGACAAGgtaaaaggttgcagttatcgtcgcctagatgatttttataattgagtagctgcatgatacatgtcacatgtccatgtag
species | Oryza sativa |
transcript | LOC_Os01g48990.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTTTGAAGATGAAGCTTCCACGGTATGACAAG TCTGCTTTTGGTGGAAGAGGTGATCGGGCTGATCCTTCAACATGGCCAGAGEST: gi|29687191|gb|CB683466.1|CB683466
genomic: GTTTGAAGATGAAGCTTCCACGGTATGACAAGgtaaaaggtt ... gtccatgtagTCTGCTTTTGGTGGAAGAGGTGATCGGGCTGATCCTTCAACATGGCCAGAG
EST: GTTTGAAGATGAAGCTTCCACGGTATGACAAG TCTGCTTTTGGTGGAAGAGGTGATCGGGCTGATCCTTCAACATGGCCAGAGEST: gi|29626889|gb|CB631900.1|CB631900
genomic: GTTTGAAGATGAAGCTTCCACGGTATGACAAGgtaaaaggtt ... gtccatgtagTCTGCTTTTGGTGGAAGAGGTGATCGGGCTGATCCTTCAACATGGCCAGAG
EST: GTTTGAAGATGAAGCTTCCACGGTATGACAAG TCTGCTTTTGGTGGAAGAGGTGATCGGGCTGATCCTTCAACATGGCCAGAG
genomic: GTTTGAAGATGAAGCTTCCACGGTATGACAAGgtaaaaggtt ... gtccatgtagTCTGCTTTTGGTGGAAGAGGTGATCGGGCTGATCCTTCAACATGGCCAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTGAAGATGAAGCTTCCACGGTATGACAAGgtaaaaggttgcagttatcgtcgcctagatgatttttataattgagtagctgcatgatacatgtcacatgtccatgtag
- TTGAAG
- TGAAGA
- - AAGATG
- - - - TGAAGC