1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAAGGACACAAGAGAAATGTTGGAGGAGCAGGAAGCTGTCCGTGGCCGCTTGTTCACTATTCAGGATGTTATGCAAAGCACTGTTCGAGCATGGTTACAAgtatgcaccgagctatttttcattcttactgttgacttgacttgtaattgatagccaggttttgctcttctccag
species | Oryza sativa |
transcript | LOC_Os01g47460.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTCAGGATGTTATGCAAAGCACTGTTCGAGCATGGTTACAA GATAGAAGCCTTCGTATCACCCACAATTGGGCTATTTTTGGGGGTGGCGGCEST: gi|86479486|gb|CI122119.1|CI122119
genomic: TTCAGGATGTTATGCAAAGCACTGTTCGAGCATGGTTACAAgtatgcaccg ... tcttctccagGATAGAAGCCTTCGTATCACCCACAATTTGGCTATTTTTGGGGGTGGCGGC
EST: TGTTCACTATTCAGGATGTTATGCAAAGCACTGTTCGAGCATGGTTACAA GATAGAAGCCTTCGTATCACCCACAATTTGGCTATTTTTGGGGGTGGCGGCEST: gi|38476262|gb|CF960395.1|CF960395
genomic: TGTTCACTATTCAGGATGTTATGCAAAGCACTGTTCGAGCATGGTTACAAgtatgcaccg ... tcttctccagGATAGAAGCCTTCGTATCACCCACAATTTGGCTATTTTTGGGGGTGGCGGC
EST: TGTTCACTATTCAGGATGTTATGCAAAGCACTGTTCGAGCATGGTTACAA GATAGAAGCCTTCGTATCACCCACAATTTGGCTATTTTTGGGGGTGGCGGC
genomic: TGTTCACTATTCAGGATGTTATGCAAAGCACTGTTCGAGCATGGTTACAAgtatgcaccg ... tcttctccagGATAGAAGCCTTCGTATCACCCACAATTTGGCTATTTTTGGGGGTGGCGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGGACACAAGAGAAATGTTGGAGGAGCAGGAAGCTGTCCGTGGCCGCTTGTTCACTATTCAGGATGTTATGCAAAGCACTGTTCGAGCATGGTTACAAgtatgcaccgagctatttttcattcttactgttgacttgacttgtaattgatagccaggttttgctcttctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG