1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
CGATGTTTACATGTCTTATCTTCCACTTGCTCATATCTTTGATCGTGTTGTGGAAGAGCTATTTATGTTCCATGGTGCTTCCATTGGATTTTGGCGTGGGgtaagcaccgttacatgtttactgatccctcttggattttgattttttgaacctgtgatgactatcttaaaaatttggttcag
species | Oryza sativa |
transcript | LOC_Os01g46750.4 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAGAGCTATTTATGTTCCATGGGTGCTTCCATTGGGATTTTGGCCGTGGG GATGTTAAGCTGCTTGTTGAAGATATTGGGGACACTTGAAACCAACTATCEST: gi|29673146|gb|CB669421.1|CB669421
genomic: AAGAGCTATTTATGTTCCATGG-TGCTTCCATTGG-ATTTTGGC-GTGGGgtaagcaccg ... tttggttcagGATGTTAAGCTGCTTGTTGAAGATATTGGG-ACACT-GAAACCAACTATC
EST: TGGAAGAGCTATTTATGTTCCATGGTGCTTCCATTGGATTTTGGCGTGGG GATGTTAAGCTGCTTGTTGAAGATATTGGGACACTGAAACCAACTATCTTGEST: gi|58672830|gb|CK061516.1|CK061516
genomic: TGGAAGAGCTATTTATGTTCCATGGTGCTTCCATTGGATTTTGGCGTGGGgtaagcaccg ... tttggttcagGATGTTAAGCTGCTTGTTGAAGATATTGGGACACTGAAACCAACTATCTTG
EST: TGGAAGAGCTATTTATGTTCCATGGTGCTTCCATTGGATTTTGGCGTGGG GATGTTAAGCTGCTTGTTGAAGATATTGGGACACTGAAACCAACTATCTTGEST: gi|29618098|gb|CB623110.1|CB623110
genomic: TGGAAGAGCTATTTATGTTCCATGGTGCTTCCATTGGATTTTGGCGTGGGgtaagcaccg ... tttggttcagGATGTTAAGCTGCTTGTTGAAGATATTGGGACACTGAAACCAACTATCTTG
EST: TGGAAGAGCTATTTATGTTCCATGGTGCTTCCATTGGATTTTGGCGTGGG GATGTTAAGCTGCTTGTTGAAGATATTGGGACACTGAAACCAACTATCTTG
genomic: TGGAAGAGCTATTTATGTTCCATGGTGCTTCCATTGGATTTTGGCGTGGGgtaagcaccg ... tttggttcagGATGTTAAGCTGCTTGTTGAAGATATTGGGACACTGAAACCAACTATCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGATGTTTACATGTCTTATCTTCCACTTGCTCATATCTTTGATCGTGTTGTGGAAGAGCTATTTATGTTCCATGGTGCTTCCATTGGATTTTGGCGTGGGgtaagcaccgttacatgtttactgatccctcttggattttgattttttgaacctgtgatgactatcttaaaaatttggttcag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT