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ATCTTCAAGACTTTCCCCAAGTCAGCTGAATTCTTGAAAAgtaggtttcactcatccataccatcatcaagaaataacatgcttctaccatgaaattaaagatgtaatactatttgcag
species | Oryza sativa |
transcript | LOC_Os01g46750.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATCTTCAAGACTTTCCCCAAGTCAGCTGAATTCTTGAAAA CAATCGTTAGTTTTGGGAAGGTAACTCAGGAACAAAAGGAAAATGCCTCCAEST: gi|29673146|gb|CB669421.1|CB669421
genomic: ATCTTCAAGACTTTCCCCAAGTCAGCTGAATTCTTGAAAAgtaggtttca ... ctatttgcagCAATCGTTAGTTTTGGGAAGGTAACTCAGGAACAAAAGGAAAATGCCTCCA
EST: AGCTGAATTCTTG-CAA TAATCGTTAGTTTTGGGAAGGTAACTCAGGAACAAAAGGAAAATGCCTCCAEST: gi|29618098|gb|CB623110.1|CB623110
genomic: AGCTGAATTCTTGAAAAgtaggtttca ... ctatttgcagCAATCGTTAGTTTTGGGAAGGTAACTCAGGAACAAAAGGAAAATGCCTCCA
EST: ATCTTCAAGACTTTCCCCAAGTCAGCTGAATTCTTGAAAA CAATCGTTAGTTTTGGGAAGGTAACTCAGGAACAAAAGGAAAATGCCTCCAEST: gi|88349500|gb|CI653779.1|CI653779
genomic: ATCTTCAAGACTTTCCCCAAGTCAGCTGAATTCTTGAAAAgtaggtttca ... ctatttgcagCAATCGTTAGTTTTGGGAAGGTAACTCAGGAACAAAAGGAAAATGCCTCCA
EST: ATCTTCAAGACTTTCCCCAAGTCAGCTGAATTCTTGAAAA CAATCGTTAGTTTTGGGAAGGTAACTCAGGAACAAAAGGAAAATGCCTCCA
genomic: ATCTTCAAGACTTTCCCCAAGTCAGCTGAATTCTTGAAAAgtaggtttca ... ctatttgcagCAATCGTTAGTTTTGGGAAGGTAACTCAGGAACAAAAGGAAAATGCCTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTTCAAGACTTTCCCCAAGTCAGCTGAATTCTTGAAAAgtaggtttcactcatccataccatcatcaagaaataacatgcttctaccatgaaattaaagatgtaatactatttgcag
- - - - - - - - - - TCAGCT
- - - - - - - - - - - CAGCTG
- - - - - - - - - - - AGCTGA