1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
AAACATGTCGATGACAATGCTGACATTACCATATCATGTGCTCCCATCGACGGGAGgtaaattagttcttgtgcatcctgattctatgagcgtgccttatccaacataagatgcatgtgttctaattttcttcttttttattgggaag
species | Oryza sativa |
transcript | LOC_Os01g44220.4 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTCGATGACAATGCTGACATTACCATATCATGTGCTCCCATCGACGGGAG CCGAGCTTCTGACTATGGACTGGTGAAGTTTGATGATTCAGGCCGTGTGATEST: gi|88461656|gb|CI695498.1|CI695498
genomic: GTCGATGACAATGCTGACATTACCATATCATGTGCTCCCATCGACGGGAGgtaaattagt ... tattgggaagCCGAGCTTCTGACTATGGACTGGTGAAGTTTGATGATTCAGGCCGTGTGAT
EST: GTCGATGACAATGCTGACATTACCATATCATGTGCTCCCATCGACGGGAG CCGAGCTTCTGACTATGGACTGGTGAAGTTTGATGATTCAGGCCGTGTGATEST: gi|116875001|gb|EC365509.1|EC365509
genomic: GTCGATGACAATGCTGACATTACCATATCATGTGCTCCCATCGACGGGAGgtaaattagt ... tattgggaagCCGAGCTTCTGACTATGGACTGGTGAAGTTTGATGATTCAGGCCGTGTGAT
EST: GTCGATGACAATGCTGACATTACCATATCATGTGCTCCCATCGACGGGAG CCGAGCTTCTGACTATGGACTGGTGAAGTTTGATGATTCAGGCCGTGTGATEST: gi|66915625|gb|CX102473.1|CX102473
genomic: GTCGATGACAATGCTGACATTACCATATCATGTGCTCCCATCGACGGGAGgtaaattagt ... tattgggaagCCGAGCTTCTGACTATGGACTGGTGAAGTTTGATGATTCAGGCCGTGTGAT
EST: GTCGATGACAATGCTGACATTACCATATCATGTGCTCCCATCGACGGGAG CCGAGCTTCTGACTATGGACTGGTGAAGTTTGATGATTCAGGCCGTGTGAT
genomic: GTCGATGACAATGCTGACATTACCATATCATGTGCTCCCATCGACGGGAGgtaaattagt ... tattgggaagCCGAGCTTCTGACTATGGACTGGTGAAGTTTGATGATTCAGGCCGTGTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACATGTCGATGACAATGCTGACATTACCATATCATGTGCTCCCATCGACGGGAGgtaaattagttcttgtgcatcctgattctatgagcgtgccttatccaacataagatgcatgtgttctaattttcttcttttttattgggaag
- - - - - - - - ATGCTG