1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAACTTGTTAAAGACACCAGGGAAGGACCAAGTTGAATGTCATTCTCCAAAACCAATATTGCTAGACACTGGTGAAATGAAGGAACCATATGATTGGGCGgtatggcttctctctctctctcttttaataatagtaggcaggcacatgtggtacctttatatttgaaacacctagttcatttactctttgagttttgata...
species | Oryza sativa |
transcript | LOC_Os01g43520.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AACCAATATTGCTAGACACTGGTGAAATGAAGGAACCATATGATTGGGCG CCTGCGATACTTCCAGTTCAAATGATTAGAATTGGTCAGCTGGTTATCTTGEST: gi|29669248|gb|CB665523.1|CB665523
genomic: AACCAATATTGCTAGACACTGGTGAAATGAAGGAACCATATGATTGGGCGgtatggcttc ... ttttatgcagCCTGCGATACTTCCAGTTCAAATGATTAGAATTGGTCAGCTGGTTATCTTG
EST: AACCAATATTGCTAGACACTGGTGAAATGAAGGAACCATATGATTGGGCG CCTGCGATACTTCCAGTTCAAATGATTAGAATTGGTCAGCTGGTTATCTTGEST: gi|88852119|gb|CI683637.1|CI683637
genomic: AACCAATATTGCTAGACACTGGTGAAATGAAGGAACCATATGATTGGGCGgtatggcttc ... ttttatgcagCCTGCGATACTTCCAGTTCAAATGATTAGAATTGGTCAGCTGGTTATCTTG
EST: AACCAATATTGCTAGACACTGGTGAAATGAAGGAACCATATGATTGGGCG CCTGCGATACTTCCAGTTCAAATGATTAGAATTGGTCAGCEST: gi|58652780|gb|CK041460.1|CK041460
genomic: AACCAATATTGCTAGACACTGGTGAAATGAAGGAACCATATGATTGGGCGgtatggcttc ... ttttatgcagCCTGCGATACTTCCAGTTCAAATGATTAGAATTGGTCAGC
EST: AACCAATATTGCTAGACACTGGTGAAATGAAGGAACCATATGATTGGGCG CCTGCAATACTTCCAGTTCAAATGATTAGAATTGGTCAGCTGGTTATCTTG
genomic: AACCAATATTGCTAGACACTGGTGAAATGAAGGAACCATATGATTGGGCGgtatggcttc ... ttttatgcagCCTGCGATACTTCCAGTTCAAATGATTAGAATTGGTCAGCTGGTTATCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACTTGTTAAAGACACCAGGGAAGGACCAAGTTGAATGTCATTCTCCAAAACCAATATTGCTAGACACTGGTGAAATGAAGGAACCATATGATTGGGCGgtatggcttctctctctctctcttttaataatagtaggcaggcacatgtggtacctttatatttgaaacacctagttcatttactctttgagttttgata
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