Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTAAAGGAATCGCAATCTGGCATATAGGCTTAAGCGCTGAATCTGACGGCAGCCTGTCAACTGAGAATGTGGCTGTACTTTCTGGCCATGATGGGGAGgtacaataaacttgtcttgtctttgtgcagtagttattggctgtattacatgggctttctggagaatgtcttttgttcatgaggctccttgagaaattacagtatagttgaagaggactggtcctagtgtaatttttactgattattcggtacacatgcttgtttttcacaccttactag

Basic information

species Oryza sativa
transcript LOC_Os01g43250.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86526964|gb|CI167170.1|CI167170
EST:     GCAGCCTGTCAACTGAGAATGTGGCTGTACTTTCTGGCCATGATGGGGAG                         GTCCTGCAACTGGAATGGGACATGGGCGGTATGACACTCGCATCGACCGGA
genomic: GCAGCCTGTCAACTGAGAATGTGGCTGTACTTTCTGGCCATGATGGGGAGgtacaataaa ... accttactagGTCCTGCAACTGGAATGGGACATGGGCGGTATGACACTCGCATCGACCGGA
EST: gi|29658632|gb|CB654907.1|CB654907
EST:     GCAGCCTGTCAACTGAGAATGTGGCTGTACTTTCTGGCCATGATGGGGAG                         GTCCTGCAACTGGAATGGGACATGGGCGGTATGACACTCGCATCGACCGGA
genomic: GCAGCCTGTCAACTGAGAATGTGGCTGTACTTTCTGGCCATGATGGGGAGgtacaataaa ... accttactagGTCCTGCAACTGGAATGGGACATGGGCGGTATGACACTCGCATCGACCGGA
EST: gi|88214365|gb|CI214214.1|CI214214
EST:     GCAGCCTGTCAACTGAGAATGTGGCTGTACTTTCTGGCCATGATGGGGAG                         GTCCTGCAACTGGAATGGGACATGGGCGGTATGACACTCGCATCGACCGGA
genomic: GCAGCCTGTCAACTGAGAATGTGGCTGTACTTTCTGGCCATGATGGGGAGgtacaataaa ... accttactagGTCCTGCAACTGGAATGGGACATGGGCGGTATGACACTCGCATCGACCGGA
EST: gi|3763201|gb|AU029953.1|AU029953
EST:     GCAGCCTGTCAACTGAGAATGTGGCTGTACTTTCTGGCCATGATGGGGAG                         GTCCTGCAACTGGAATGGGACATGGGCGGTATGACACTCGCATCGACCGGA
genomic: GCAGCCTGTCAACTGAGAATGTGGCTGTACTTTCTGGCCATGATGGGGAGgtacaataaa ... accttactagGTCCTGCAACTGGAATGGGACATGGGCGGTATGACACTCGCATCGACCGGA
EST: gi|66922346|gb|CX109194.1|CX109194
EST:     GCAGCCTGTCAACTGAGAATGTGGCTGTACTTTCTGGCCATGATGGGGAG                         GTCCTGCAACTGGAATGGGACATGGGCGGTATGACACTCGCATCGACCGGA
genomic: GCAGCCTGTCAACTGAGAATGTGGCTGTACTTTCTGGCCATGATGGGGAGgtacaataaa ... accttactagGTCCTGCAACTGGAATGGGACATGGGCGGTATGACACTCGCATCGACCGGA
EST: gi|86253118|gb|CI058043.1|CI058043
EST:     GCAGCCTGTCAACTGAGAATGTGGCTGTACTTTCTGGCCATGATGGGGAG                         GTCCTGCAACTGGAATGGGACATGGGCGGTATGACACTCGCATCGACCGGA
genomic: GCAGCCTGTCAACTGAGAATGTGGCTGTACTTTCTGGCCATGATGGGGAGgtacaataaa ... accttactagGTCCTGCAACTGGAATGGGACATGGGCGGTATGACACTCGCATCGACCGGA
EST: gi|89181023|gb|CI045106.1|CI045106
EST:     GCAGCCTGTCAACTGAGAATGTGGCTGTACTTTCTGGCCATGATGGGGAG                         GTCCTGCAACTGGAATGGGACATGGGCGGTATGACACTCGCATCGACCGGA
genomic: GCAGCCTGTCAACTGAGAATGTGGCTGTACTTTCTGGCCATGATGGGGAGgtacaataaa ... accttactagGTCCTGCAACTGGAATGGGACATGGGCGGTATGACACTCGCATCGACCGGA