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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTATCAAGACAGAGATGAATCCCATTTTGACACCAAGGTCAGCAGGTCCTGAGGGGTCATTTATTGGTGTCCAAGgtaacatgttttcagtatagtccctggaattacttttcttgtaattttttttcttagttcaatcttgaagagtttattagccttgctgtaaaattataggaccttggaacatgatcttttttatgttatgcataccttaatcagatgtatttttaacag

Basic information

species Oryza sativa
transcript LOC_Os01g42260.3
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88343088|gb|CI641614.1|CI641614
EST:     TTTGACACCAAGGTCAGCAGGTCCTGAGGGGTCATTTATTGGTGTCCAAG                         GGTCTAATCAAGGTGGAAACAATTTGACTCTGAAAGGATGGCCACTCACG
genomic: TTTGACACCAAGGTCAGCAGGTCCTGAGGGGTCATTTATTGGTGTCCAAGgtaacatgtt ... tttttaacagGGTCTAATCAAGCTGGAAACAATTTGACTCTGAAAGGATGGCCACTCACG
EST: gi|88342451|gb|CI645973.1|CI645973
EST:     TTTGACACCAAGGTCAGCAGGTCCTGAGGGGTCATTTATTGGTGTCCAAG                         GGTCTAATCAAGCTGGAAACAATTTGACTCTGAAAGGATGGCCACTCACG
genomic: TTTGACACCAAGGTCAGCAGGTCCTGAGGGGTCATTTATTGGTGTCCAAGgtaacatgtt ... tttttaacagGGTCTAATCAAGCTGGAAACAATTTGACTCTGAAAGGATGGCCACTCACG
EST: gi|87006683|gb|CI285717.1|CI285717
EST:     TTTGACACCAAGGTCAGCAGGTCCTGAGGGGTCATTTATTGGTGTCCAAG                         GGTCTAATCAAGCTGGAAACAATTTGACTCTGAAAGGATGGCCACTCACG
genomic: TTTGACACCAAGGTCAGCAGGTCCTGAGGGGTCATTTATTGGTGTCCAAGgtaacatgtt ... tttttaacagGGTCTAATCAAGCTGGAAACAATTTGACTCTGAAAGGATGGCCACTCACG
EST: gi|88336511|gb|CI656782.1|CI656782
EST:     TTTGACACCAAGGTCAGCAGGTCCTGAGGGGTCATTTATTGGTGTCCAAG                         GGTCTAATCAAGCTGGAAACAATTTGACTCTGAAAGGATGGCCACTCACG
genomic: TTTGACACCAAGGTCAGCAGGTCCTGAGGGGTCATTTATTGGTGTCCAAGgtaacatgtt ... tttttaacagGGTCTAATCAAGCTGGAAACAATTTGACTCTGAAAGGATGGCCACTCACG
EST: gi|58608936|gb|CK036969.1|CK036969
EST:     TTTGACACCAAGGTCAGCAGGTCCTGAGGGGTCATTTATTGGTGTCCAAG                         GGTCTAATCAAGCTGGAAACAATTTGACTCTGAAAG
genomic: TTTGACACCAAGGTCAGCAGGTCCTGAGGGGTCATTTATTGGTGTCCAAGgtaacatgtt ... tttttaacagGGTCTAATCAAGCTGGAAACAATTTGACTCTGAAAG
EST: gi|58676165|gb|CK064852.1|CK064852
EST:     TTTGACACCAAGGTCAGCAGGTCCTGAGGGGTCATTTATTGGTGTCCAAG                         GGTCTAATCAAGCTGGAAACAATTTGACTCTGAAAGGATGGCCACTCACG
genomic: TTTGACACCAAGGTCAGCAGGTCCTGAGGGGTCATTTATTGGTGTCCAAGgtaacatgtt ... tttttaacagGGTCTAATCAAGCTGGAAACAATTTGACTCTGAAAGGATGGCCACTCACG
EST: gi|88290429|gb|CI665218.1|CI665218
EST:     TTTGACACCAAGGTCAGCAGGTCCTGAGGGGTCATTTATTGGTGTCCAAG                         GGTCTAATCAAGCTGGAAACAATTTGACTCTGAAAGGATGGCCACTCACG
genomic: TTTGACACCAAGGTCAGCAGGTCCTGAGGGGTCATTTATTGGTGTCCAAGgtaacatgtt ... tttttaacagGGTCTAATCAAGCTGGAAACAATTTGACTCTGAAAGGATGGCCACTCACG