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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTAAAGAGTGTCCTCTTCCTTATGCCTTGCCATTCGACACCTTATTACTCTACATTACATTACAACCTACCTATGCGCTTTTTGGACTGTACTCCTAGgtgattattctttcattgtttctagtccagtagatatagcatttctttttaccatgttgtacccatcatagccaattatcctgacttagtttgcatgttaccag

Basic information

species Oryza sativa
transcript LOC_Os01g39810.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g39810.4 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G000937_T02 (Zea mays), 5'ss of exon 9
GAGTAAAGAGTGTCCTCTTCCTTATGCCTTGCCATTCGACACCTTATTACTCTACATTACATTACAACCTACCTATGCGCTTTTTGGACTGTACTCCTAGgtgattattctttcattgtttctagtccagtagatatagcatttctttttaccatg-ttgtaccc-atcatagccaattatcctgacttagtttgcatgttaccag
|||| | |||||| ||||| || |||||||| ||||| |||||||| ||||| || ||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||| | |   | ||| || |  |  | |||    |  | |  |  | ||  |||| |   |  | |        | ||||||   | | | ||    |||
GAGTGAGGAGTGTTCTCTTTCTCATGCCTTGTCATTCAACACCTTACTACTCAACCTTACATTACAATCTACCTATGCGTTTTTTGGACTGCACTCCTAGgtggttattttatttgt-tttttaatgaaaaaaatagttaacctttcatatctatacttgtgcttgaatacatatgtccctgctgactcgttctac-tgcactcag

upper sequence: LOC_Os01g39810.4 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G164175_T02 (Zea mays), 5'ss of exon 9
GAGTAAAGAGTGTCCTCTTCCTTATGCCTTGCCATTCGACACCTTATTACTCTACATTACATTACAACCTACCTATGCGCTTTTTGGACTGTACTCCTAGgtgattattct-ttcattgtttctagtccagtagatatagcatttctttttaccatgttgtaccc-atcatagccaattatcctgacttagtttgcatgttaccag
|||| | |||||| ||||| || |||||||| ||||| |||||||| ||||| || ||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||| | ||  || |||   | | |  | |  || | |||| | |    |  |||| |   |  | |  |     | |||||    | | | ||    |||
GAGTGAGGAGTGTTCTCTTTCTCATGCCTTGTCATTCAACACCTTACTACTCAACCTTACATTACAATCTACCTATGCGTTTTTTGGACTGCACTCCTAGgtggttattttctttgttttttaatgacaaaaatagttaacctttcatatctatac-ttgtgcttgaatacatacgtccctgctgacgcgttctac-tgcactcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86427881|gb|CI072978.1|CI072978
EST:     TCTACATTACATTACAACCTACCTATGCGCTTTTTGGACTGTACTCCTAG                         TGAAAACAAAGGGACCTTGGATGAGTCAGACCGTTTCCTCATGAACCCAGC
genomic: TCTACATTACATTACAACCTACCTATGCGCTTTTTGGACTGTACTCCTAGgtgattattc ... atgttaccagTGAAAACAAAGGGACCTTGGATGAGTCAGACCGTTTCCTCATGAACCCAGC