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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATAATTTTCTCTAGTGGGGTTGATTACATAGATGCTCCAACACCCTACATGATGGGACTTCATTCAGGTGTTGACACATCCACAGTGACAATGGATGGTgtaagttggttccattatttaatacttttgtttttacttgcctctgttattttggagtattttactacttacatttagcactgtgaaataagccttctcacaattgatttggcgaactggattctttgctgactgaattgctttactttttag

Basic information

species Oryza sativa
transcript LOC_Os01g39380.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g39380.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G074572_T01 (Zea mays), 5'ss of exon 7
AATAATTTTCTCTAGTGGGGTTGATTACATAGATGCTCCAACACCCTACATGATGGGACTTCATTCAGGTGTTGACACATCCACAGTGACAATGGATGGTgtaagttggttccattatttaatacttttgtttttacttgcctctgttattttggagtattttactacttacatttagcactgtgaaataagccttctcacaattgatttggcgaactggattctttgctgactgaattgctttactttttag
|||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||| |||||||| ||||||||||||||  |||||||||||||||||||||||||        | |||  ||     |||  | ||||   |    ||||||    | || ||  ||   | | | | ||  | || ||  |  |||    | |||| |                                         
AATAATATTCTCTAGTGGGGTTGATTACATTGATGCCCCGACACCCTACATGATGGGGCTTCATTCTGGTGTTGACACATCTGCAGTGACAATGGATGGTgtaagttgtaa-----aattaggacgaggttttccatttgc---taaacttttgg----tcttgctctttttctcttgtagtgatatatcagtata-tcagttctcatttagt----------------------------------------

upper sequence: LOC_Os01g39380.3 (Oryza sativa), 5'ss of exon 7
lower sequence: Vv17s0000g03950.t01 (Vitis vinifera), 5'ss of exon 7
AATAATTTTCTCTAGTGGGGTTGATTACATAGATGCTCCAACACCCTACATGATGGGACTTCATTCAGGTGTTGACACATCCACAGTGACAATGGATGGTgtaagttggttccattatttaatacttttgtttttacttgcctc-tgttattttggagtattttactacttacatttagcactgtgaaataagccttctcacaattgatttggcgaactggattctttgctgactgaattgctttactttttag
| || | || |  ||||| || || || || |||||||| ||||| || |||||||| || ||||||||||||||||| || |   || ||||||||||||||||||  |||   ||| ||   ||||| || | |    |    | ||  || | | |  ||||  | | |||| | | |   ||||  || |||      |                                                   
ATTACTATTTTTCAGTGGAGTGGACTATATTGATGCTCCTACACCATATATGATGGGTCTCCATTCAGGTGTTGACACTTCTAATCTGGCAATGGATGGTgtaagttacttcatatatgtatatctttttttatcagaaacaaaatattcattagtaatgatttagaagt-acatgt-gaaggatgaag-aatcctgagtgta---------------------------------------------------