1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAAAACGAATCATCATGAAGAAGATATAgtacgccatttttgtcacgtgagctttaaacattagtctgggagtgggatttctcctttctgaattttcgtttctgtttcatgggtagtatttttttagtgatcacgcattgttttttgtgcag
species | Oryza sativa |
transcript | LOC_Os01g34620.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGATATTGCACAAAAGCGTGAACAAAACGAATCATCATGAAGAAGATATA AACCAAGTATGGATTTGCCTTCTCCTGTTTGATCTTTTCATEST: gi|86596721|gb|CI286634.1|CI286634
genomic: TGATATTGCACAAAAGCGTGAACAAAACGAATCATCATGAAGAAGATATAgtacgccatt ... ttttgtgcagAACCAAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCAT
EST: TGATATTGCACAAAAGCGTGAACAAAACGAATCATCATGAAGAAGATATA AACCAAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCAT
genomic: TGATATTGCACAAAAGCGTGAACAAAACGAATCATCATGAAGAAGATATAgtacgccatt ... ttttgtgcagAACCAAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAAAACGAATCATCATGAAGAAGATATAgtacgccatttttgtcacgtgagctttaaacattagtctgggagtgggatttctcctttctgaattttcgtttctgtttcatgggtagtatttttttagtgatcacgcattgttttttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG