1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCTGATGTCAATGCAGTCACCTTTGCTGATGAAGGTAGTGATGTTTTATACTCTGGAAGTGATGATAGCCTCTGTAAGgtgagactaatatttcccaatttcatttactctttctttaaagatgattctatttgcatttgctggtttaagtcagacagcaacattgcaggtttatctg...
species | Oryza sativa |
transcript | LOC_Os01g28680.4 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATGAAGGTAGTGATGTTTTATACTCTGGAAGTGATGATAGCCTCTGTAAG GTCTGGGATAGGCGCTGCAACAAGAGAGGAAAACAAGTTGGTGTTTTGACAEST: gi|29688485|gb|CB684760.1|CB684760
genomic: ATGAAGGTAGTGATGTTTTATACTCTGGAAGTGATGATAGCCTCTGTAAGgtgagactaa ... caatcttcagGTCTGGGATAGGCGCTGCAACAAGAGAGGAAAACAAGTTGGTGTTTTGACA
EST: ATGAAGGTAGTGATGTTTTATACTCTGGAAGTGATGATAGCCTCTGTAAG GTCTGGGATAGGCGCTGCAACAAGAGAGGAAAACAAGTTGGTGTTTTGACAEST: gi|33693127|gb|CF321366.1|CF321366
genomic: ATGAAGGTAGTGATGTTTTATACTCTGGAAGTGATGATAGCCTCTGTAAGgtgagactaa ... caatcttcagGTCTGGGATAGGCGCTGCAACAAGAGAGGAAAACAAGTTGGTGTTTTGACA
EST: ATGAAGGTAGTGATGTTTTATACTCTGGAAGTGATGATAGCCTCTGTAAG GTCTGGGATAGGCGCTGCAACAAG
genomic: ATGAAGGTAGTGATGTTTTATACTCTGGAAGTGATGATAGCCTCTGTAAGgtgagactaa ... caatcttcagGTCTGGGATAGGCGCTGCAACAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGATGTCAATGCAGTCACCTTTGCTGATGAAGGTAGTGATGTTTTATACTCTGGAAGTGATGATAGCCTCTGTAAGgtgagactaatatttcccaatttcatttactctttctttaaagatgattctatttgcatttgctggtttaagtcagacagcaacattgcaggtttatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG