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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCTGCTTCCCTTGCAATTGCCATAATGAAAAAGGGACACAGGGGTCGAATCTTTTTGGGCTGTGACAATAAGCCTCTTTCCAGgtcagtgctaggctacttgttttgactaattatttgtttcctacgtccacttagctgtgtatcatgactgcactaatagctgaacgggtctgtcaactgaaacaaaatttacttcaacttttcag

Basic information

species Oryza sativa
transcript LOC_Os01g26920.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g26920.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G017853_T01 (Zea mays), 5'ss of exon 7
GATGCTGCTTCCCTTGCAATTGCCATAATGAAAAAGGGACACAGGGGTCGAATCTTTTTGGGCTGTGACAATAAGCCTCTTTCCAGgtcagtgctaggctacttgttttgactaattatttgtttcctacgtccacttagctgtgtatcatgactgcactaatagctgaacgggtctgtcaactgaaacaaaatttacttcaacttttcag
|||||||| ||||||||  | || || |||||||||||||   || ||||||| ||| |||| |||||||| ||||| |||||||||| | ||||   ||  |  |  |  |   || |||||||  || |||   || ||||||   ||    | | ||  | | |   |   | | | ||   ||| ||| |||||             
GATGCTGCCTCCCTTGCTGTAGCAATCATGAAAAAGGGACTGCGGAGTCGAATATTTCTGGGTTGTGACAACAAGCCCCTTTCCAGgtaactgctgaccttgt--tcatatcggtttctttgttttgta-gtcagttttgctgtg---cagagttactcttctggtttgcctaattt-taaaggaaaaaaaactttacag-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86505584|gb|CI148217.1|CI148217
EST:     GGACACAGGGGTCGAATCTTTTTGGGCTGTGACCATAAGCCTCTTTCCAG                         GCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTT
genomic: GGACACAGGGGTCGAATCTTTTTGGGCTGTGACAATAAGCCTCTTTCCAGgtcagtgcta ... aacttttcagGCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTT
EST: gi|88225514|gb|CI225430.1|CI225430
EST:     GGACACAGGGGTCGAATCTTTTTGGGCTGTGACAATAAGCCTCTTTCCAG                         GCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTT
genomic: GGACACAGGGGTCGAATCTTTTTGGGCTGTGACAATAAGCCTCTTTCCAGgtcagtgcta ... aacttttcagGCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTT
EST: gi|86869498|gb|CI346358.1|CI346358
EST:     CCTCTTTCCAG                         GCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTT
genomic: CCTCTTTCCAGgtcagtgcta ... aacttttcagGCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTT
EST: gi|86889862|gb|CI333513.1|CI333513
EST:     GCCTCTTTCCAG                         GCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTT
genomic: GCCTCTTTCCAGgtcagtgcta ... aacttttcagGCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTT
EST: gi|88539969|gb|CI469969.1|CI469969
EST:     GGACACAGGGGTCGAATCTTTTTGGGCTGTGACAATAAGCCTCTTTCCAG                         GCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTT
genomic: GGACACAGGGGTCGAATCTTTTTGGGCTGTGACAATAAGCCTCTTTCCAGgtcagtgcta ... aacttttcagGCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTT