1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGACAATCTTCCTCCAAGTGGAGAAGCAGATCGACTGTTTAAGGCACTGAAAAGTTGCAAAGTTCGATACTTCAGGACTTCCAGCGATAGATTACTCATGgtacatacttttaataattttctcacaattgcttctatttctccacttcattggtcatttccagtgcttaattatgtatagaaattatatatgtactattatttatctgttgtgttgtccattagaaaatctcagcaatagaacatttccacag
species | Oryza sativa |
transcript | LOC_Os01g25990.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAAGTTGCAAAGTTCGATACTTCAGGACTTCCAGCGATAGATTACTCATG GAGAGCAGCTTTAATCTGCTAACTGTCATAAAAGGAGCCAGCATGTACCGCEST: gi|29671668|gb|CB667943.1|CB667943
genomic: AAAGTTGCAAAGTTCGATACTTCAGGACTTCCAGCGATAGATTACTCATGgtacatactt ... atttccacagGAGAGCAGCTTTAATCTGCTAACTGTCATAAAAGGAGCCAGCATGTACCGC
EST: AAAGTTGCAAAGTTCGATACTTCAGGACTTCCAGCGATAGATTACTCATG -----C---TTTAATCTGCTAACTGTCATAAAAGGAGCCAGCATGTACCGCEST: gi|13420626|gb|AU174716.1|AU174716
genomic: AAAGTTGCAAAGTTCGATACTTCAGGACTTCCAGCGATAGATTACTCATGgtacatactt ... atttccacagGAGAGCAGCTTTAATCTGCTAACTGTCATAAAAGGAGCCAGCATGTACCGC
EST: AAAGTTGCAAAGTTCGATACTTCAGGACTTCCAGCGATAGATTACTCATG GAGAGCAGCTTTAATCTGCTAACTGTCATAAAAGGAGCCAGCATGTACCGCEST: gi|29674811|gb|CB671086.1|CB671086
genomic: AAAGTTGCAAAGTTCGATACTTCAGGACTTCCAGCGATAGATTACTCATGgtacatactt ... atttccacagGAGAGCAGCTTTAATCTGCTAACTGTCATAAAAGGAGCCAGCATGTACCGC
EST: AAAGTTGCAAAGTTCGATACTTCAGGACTTCCAGCGATAGATTACTCATG GAGAGCAGCTTTAATCTGCTAACTGTCATAAAAGGAGCCAGCATGTACCGCEST: gi|29613651|gb|CB618664.1|CB618664
genomic: AAAGTTGCAAAGTTCGATACTTCAGGACTTCCAGCGATAGATTACTCATGgtacatactt ... atttccacagGAGAGCAGCTTTAATCTGCTAACTGTCATAAAAGGAGCCAGCATGTACCGC
EST: AAAGTTGCAAAGTTCGATACTTCAGGACTTCCAGCGATATATTACTCATG GAGAGCAGCTTTAATCTGCTAACTGTCATAAAAGGAGCCAGCATGTACCGC
genomic: AAAGTTGCAAAGTTCGATACTTCAGGACTTCCAGCGATAGATTACTCATGgtacatactt ... atttccacagGAGAGCAGCTTTAATCTGCTAACTGTCATAAAAGGAGCCAGCATGTACCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACAATCTTCCTCCAAGTGGAGAAGCAGATCGACTGTTTAAGGCACTGAAAAGTTGCAAAGTTCGATACTTCAGGACTTCCAGCGATAGATTACTCATGgtacatacttttaataattttctcacaattgcttctatttctccacttcattggtcatttccagtgcttaattatgtatagaaattatatatgtactattatttatctgttgtgttgtccattagaaaatctcagcaatagaacatttccacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG