1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGTATCTTGTAGATGAGGTGAAAGATAAGAGTGGCCAACATATTGATGCTCTTTCATGGAAGCAGGAGGGTGTAAAAAACCTTCCTTTGCAAGAGAATGGgtatttttctcaatttttttttctagtatgtgtatcagtcttgctaaccaacattatacaatagtagaacttgttttttcctttaaaggaggtgcaattctaagaacattatatagttcaccacaggcatatcgcattactatgccttcgaaaatttgcgtaatgtactcattacttggttgccttccatttag
species | Oryza sativa |
transcript | LOC_Os01g25370.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CATGGAAGCAGGAGGGTGTAAAAAACCTTCCTTTGCAAGAGAATGG GTGGGATTGTGGCATGTTCATGCTCAAATACATAGATTTCTACAGCAGAGAEST: gi|33692526|gb|CF320765.1|CF320765
genomic: CATGGAAGCAGGAGGGTGTAAAAAACCTTCCTTTGCAAGAGAATGGgtatttttct ... ttccatttagGTGGGATTGTGGCATGTTCATGCTCAAATACATAGATTTCTACAGCAGAGA
EST: CTTTCATGGAAGCAGGAGGGTGTAAAAAACCTTCCTTTGCAAGAGAATGG GTGGGAATTGTGGCATGTTCATGCTCAAATACATAGATTTCTACAGCAGAGEST: gi|218485916|gb|FG967011.1|FG967011
genomic: CTTTCATGGAAGCAGGAGGGTGTAAAAAACCTTCCTTTGCAAGAGAATGGgtatttttct ... ttccatttagGTGGGA-TTGTGGCATGTTCATGCTCAAATACATAGATTTCTACAGCAGAG
EST: CTTTCATGGAAGCAGGAGGGTGTAAAAAACCTTCCTTTGCAAGAGAATGG GTGGGATTGTGGCATGTTCATGCTCAAATACATAGATTTCTACAGCAGAGAEST: gi|29662159|gb|CB658434.1|CB658434
genomic: CTTTCATGGAAGCAGGAGGGTGTAAAAAACCTTCCTTTGCAAGAGAATGGgtatttttct ... ttccatttagGTGGGATTGTGGCATGTTCATGCTCAAATACATAGATTTCTACAGCAGAGA
EST: CTTTCATGGAAGCAGGAGGGTGTAAAAAACCTTCCTTTGCAAGAGAATGG GTGGGATTGTGGCATGTTCATGCTCAAATACATAGATTTCTACAGCAGAGAEST: gi|29662158|gb|CB658433.1|CB658433
genomic: CTTTCATGGAAGCAGGAGGGTGTAAAAAACCTTCCTTTGCAAGAGAATGGgtatttttct ... ttccatttagGTGGGATTGTGGCATGTTCATGCTCAAATACATAGATTTCTACAGCAGAGA
EST: CTTTCATGGAAGCAGGAGGGTGTAAGAAACCTTCCTTTGCAAGAGAATGG GTGGGATTGTGGCATGTTCATGCTCAAATACATAGATTTCTACAGCAGAGAEST: gi|58590052|gb|CF988360.1|CF988360
genomic: CTTTCATGGAAGCAGGAGGGTGTAAAAAACCTTCCTTTGCAAGAGAATGGgtatttttct ... ttccatttagGTGGGATTGTGGCATGTTCATGCTCAAATACATAGATTTCTACAGCAGAGA
EST: CTTTCATGGAAGCAGGAGGGTGTAAAAAACCTTCCTTTGCAAGAGAATGG GTGGGATTGTGGCATGTTCATGCTCAAATACATAGATTTCTACAGCAGAGA
genomic: CTTTCATGGAAGCAGGAGGGTGTAAAAAACCTTCCTTTGCAAGAGAATGGgtatttttct ... ttccatttagGTGGGATTGTGGCATGTTCATGCTCAAATACATAGATTTCTACAGCAGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTATCTTGTAGATGAGGTGAAAGATAAGAGTGGCCAACATATTGATGCTCTTTCATGGAAGCAGGAGGGTGTAAAAAACCTTCCTTTGCAAGAGAATGGgtatttttctcaatttttttttctagtatgtgtatcagtcttgctaaccaacattatacaatagtagaacttgttttttcctttaaaggaggtgcaattctaagaacattatatagttcaccacaggcatatcgcattactatgccttcgaaaatttgcgtaatgtactcattacttggttgccttccatttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA