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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAACACCTTGGCATAACCCATGTTTTATGCTTGTGCGCAAATGAAATTGGGCAAGCAGAATCTCAGCAGCCTGATCGTTTCGACTATCAGAACTTCTCAgtaagtatacctgagaaagtttgaggaaaaacttctagagcttcggactaattgttttgtttccttgcaatgcttcattgtttcatttctgtag

Basic information

species Oryza sativa
transcript LOC_Os01g24470.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g24470.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G061684_T01 (Zea mays), 5'ss of exon 8
TAAACACCTTGGCATAACCCATGTTTTATGCTTGTGCGCAAATGAAATTGGGCAAGCAGAATCTCAGCAGCCTGATCGTTTCGACTATCAGAACTTCTCAgtaagta-tacctgaga-----aagtttgaggaaaaactt--ctagagcttcggactaattgttttgttt-----ccttgcaatgcttcattgtttcatttctgtag
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TAAACACCTTGGCATCACCCATATATTGTGCTTGTGTGCAAATGAAATTGGACAGTCAGAATCGCAGAAGCCTGACCTTTTTGAGTATAGGAATTTCTCGgtgagttctacataatacctccatggatggaaaatcatttgcctttagcataaggcagaagactcagtttagatatctttcagtgttgaattgcttc-tctatgtag