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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTACTCCAAGGCTAAGTGAAGACAAGGTGAAGCAATGCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataacttgtgttccagatggtttctgttcctatcaagtaacacaaatttcaatgcatactgattaggttgcaccagattttaaacatgaccatg...

Basic information

species Oryza sativa
transcript LOC_Os01g21970.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86871503|gb|CI342302.1|CI342302
EST:     GCGTGGATCCAAGGCTTTAAGGGGATTATCCTCCCAAGCCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|86434796|gb|CI106029.1|CI106029
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|87026861|gb|CI259514.1|CI259514
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|87024304|gb|CI257045.1|CI257045
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|89166775|gb|CI104061.1|CI104061
EST:     AGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: AGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|86854619|gb|CI258912.1|CI258912
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|10611406|gb|AU108279.1|AU108279
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTNTTGCCAAG                         ATGGCTGCCGTA-NTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|86851215|gb|CI312616.1|CI312616
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|89194174|gb|CI116611.1|CI116611
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|86596982|gb|CI270778.1|CI270778
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAATACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|89193986|gb|CI116423.1|CI116423
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|86595077|gb|CI260316.1|CI260316
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|89194623|gb|CI117060.1|CI117060
EST:     TCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: TCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|86536490|gb|CI176696.1|CI176696
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTTCCGTAGCTGCGCTGTGCGTGCAGTACGAGTCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|8856568|gb|AU093886.1|AU093886
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTA-NTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|87024559|gb|CI259274.1|CI259274
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|12405385|gb|AU166986.1|AU166986
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|12405395|gb|AU166996.1|AU166996
EST:     CAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: CAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|87018995|gb|CI256880.1|CI256880
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|86485987|gb|CI128620.1|CI128620
EST:     GGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|89194227|gb|CI116664.1|CI116664
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|88998535|gb|CI259868.1|CI259868
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|86593903|gb|CI260132.1|CI260132
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|87024572|gb|CI259287.1|CI259287
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|87018990|gb|CI256875.1|CI256875
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|10611410|gb|AU108281.1|AU108281
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTTAN-TGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGT-AGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCC
EST: gi|87019014|gb|CI259070.1|CI259070
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|87029526|gb|CI257321.1|CI257321
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|89197961|gb|CI117439.1|CI117439
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTTCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|86484798|gb|CI127431.1|CI127431
EST:     GGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|86535119|gb|CI175325.1|CI175325
EST:     GCGTGGATCTAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|10611412|gb|AU108282.1|AU108282
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTA-NTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|86854381|gb|CI256503.1|CI256503
EST:     GAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|86493686|gb|CI136319.1|CI136319
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|89197959|gb|CI117437.1|CI117437
EST:     TTATCCTCCCAAGTCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: TTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|89193625|gb|CI116258.1|CI116258
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|87031220|gb|CI259800.1|CI259800
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|86854455|gb|CI256577.1|CI256577
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|86436469|gb|CI118191.1|CI118191
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|86538621|gb|CI178827.1|CI178827
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|86823559|gb|CI256480.1|CI256480
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|89194476|gb|CI116913.1|CI116913
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTTCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|88251777|gb|CI350205.1|CI350205
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAAGTACGAGGCGGACTTCAGGCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGC-AGTACGAGGCGGACTTCAGGCC
EST: gi|109712596|gb|CI105204.1|CI105204
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|89193699|gb|CI116332.1|CI116332
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTTCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|86598447|gb|CI355064.1|CI355064
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|88994574|gb|CI117726.1|CI117726
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCACTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|86534968|gb|CI175174.1|CI175174
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|88994090|gb|CI116054.1|CI116054
EST:     GATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGTCGGACTTCAGGCCC
genomic: GATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|86539282|gb|CI179488.1|CI179488
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|10611408|gb|AU108280.1|AU108280
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAG-TGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|88218190|gb|CI218039.1|CI218039
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|86854618|gb|CI258911.1|CI258911
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|89165637|gb|CI102727.1|CI102727
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|87024624|gb|CI259339.1|CI259339
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|86534957|gb|CI175163.1|CI175163
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|89161589|gb|CI099561.1|CI099561
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|89193757|gb|CI116390.1|CI116390
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|86537820|gb|CI178026.1|CI178026
EST:     CCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: CCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|88220931|gb|CI218782.1|CI218782
EST:     ATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: ATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|87024282|gb|CI257023.1|CI257023
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|87028046|gb|CI257206.1|CI257206
EST:     GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: GCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
EST: gi|86538619|gb|CI178825.1|CI178825
EST:     CGTGGATCCAAGGCTTGAAGGGGATTTATCCTCCCAAGGCTGTTGCCAAG                         ATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC
genomic: CGTGGATCCAAGGCTTGAAGGGGA-TTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 71 (upstream exon), 75 (downstream exon)
Score: 219

GCTACTCCAAGGCTAAGTGAAGACAAGGTGAAGCAATGCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataa ... acttaaacagATGGCTGCCGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCCAACATGAGCATCGTCGTCAAGGCTCTGAACCCACTCCTCAACAGCCGCC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTACTCCAAGGCTAAGTGAAGACAAGGTGAAGCAATGCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGgtaaaaataacttgtgttccagatggtttctgttcctatcaagtaacacaaatttcaatgcatactgattaggttgcaccagattttaaacatgaccatg

- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT