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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTATCAACAAAGTTGCACCTGCTTTCTTAATACCAGTGCTCTTCTCAATCCTGTGCATTTACATCGGTGTCTTTATTGCACCAAGGCCAAATGCTTCAAgtaaatatccacttgccaataattctttcatagttttctcttttgtttttcttgtgttgtatttctgatgatgtttttcctacctag

Basic information

species Oryza sativa
transcript LOC_Os01g19850.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g19850.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G401874_T01 (Zea mays), 5'ss of exon 3
ATTATCAACAAAGTTGCACCTGCTTTCTTAATACCAGTGCTCTTCTCAATCCTGTGCATTTACATCGGTGTCTTTATTGCACCAAGGCCAAATGCTTCAAgtaaatatccacttgccaataattctttcatagttttctcttttgtttttcttgtgttgtatttctgatgatgtttttcctacctag
|| |||||||| |||||||||||||||||  | ||||| ||||||||||| || ||||||||||| || ||||  ||||| |||  |||   ||||||||||||  |  |  | | | ||          |||| || | | | |||||| |||  ||  |  | |  ||||||  || ||||||||
ATCATCAACAAGGTTGCACCTGCTTTCTTGGTCCCAGTCCTCTTCTCAATACTATGCATTTACATTGGCGTCTCCATTGCGCCAGAGCCTGGTGCTTCAAgtaagcagtccttcgactat----------tagtattttgtctcgttttttttgcattcaacctttattgatgtgctttctacctag