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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGCCCCATGAAACTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAGgtcagcacaacacatacatgacattttaattgccatcttaatatatctatgttcctcctttttgttccctttccatgacagacttgtttcacgaatgaatatgtag

Basic information

species Oryza sativa
transcript LOC_Os01g18630.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g18630.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G077233_T06 (Zea mays), 5'ss of exon 8
GCAAGCCCCATGAAACTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAGgtcagcacaacacatacatgacattttaattgccatcttaatatatctatgttcctcctttttgttccctttccatgacagacttgtttcacgaatgaatatgtag
 |||||||   |||| ||||| |||||||||||||||||| |||||||||| | | ||||||||||| ||| ||||| ||  || |  || ||| | |   | ||     |  || |   | | ||||      |||||||||||  ||| |||   |||  |  ||| ||
ACAAGCCCACAGAAAGTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAGgttagctcaacatatgaattaatttctaagttcttccatagcccgta-atatctatgcatttt---tattttccatgacatgcttttttattgaactatcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86596608|gb|CI286521.1|CI286521
EST:     CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAG                         AAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTC
genomic: CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAGgtcagcacaa ... gaatatgtagAAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTC
EST: gi|29662754|gb|CB659029.1|CB659029
EST:     CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAG                         AAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTC
genomic: CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAGgtcagcacaa ... gaatatgtagAAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTC
EST: gi|87022160|gb|CI259232.1|CI259232
EST:     CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAG                         AAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTC
genomic: CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAGgtcagcacaa ... gaatatgtagAAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTC
EST: gi|218493897|gb|FG949292.1|FG949292
EST:     CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAG                         AAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTC
genomic: CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAGgtcagcacaa ... gaatatgtagAAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTC
EST: gi|29665540|gb|CB661815.1|CB661815
EST:     CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAG                         AAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTC
genomic: CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAGgtcagcacaa ... gaatatgtagAAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTC
EST: gi|29645988|gb|CB650995.1|CB650995
EST:     CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAG                         AAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTC
genomic: CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAGgtcagcacaa ... gaatatgtagAAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTC
EST: gi|29664682|gb|CB660957.1|CB660957
EST:     CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAG                         AAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTC
genomic: CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAGgtcagcacaa ... gaatatgtagAAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTC
EST: gi|29683212|gb|CB679487.1|CB679487
EST:     CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAG                         AAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTC
genomic: CTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAGgtcagcacaa ... gaatatgtagAAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTC