1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AATTAATCACGCAATTGGAGCTGAGGGAATTGTTAGTATGGAATGCAAACAAGTTGTGCGGGACTACGGGGACATGATCCTCGAGATGCTCATAGCACAGgtttgccacttgtctgaacattggattgaatttttcttgtgatgcttcatttttttcattgatcttggattctctgaccaaatataaaataattttgtgactgagcag
species | Oryza sativa |
transcript | LOC_Os01g18630.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAGTTGTGCGGGACTACGGGGACATGATCCTCGAGATGCTCATAGCACAG GCAAGCCCCATGAAACTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTEST: gi|29662754|gb|CB659029.1|CB659029
genomic: AAGTTGTGCGGGACTACGGGGACATGATCCTCGAGATGCTCATAGCACAGgtttgccact ... gactgagcagGCAAGCCCCATGAAACTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGT
EST: AAGTTGTGCGGGACTACGGGGACATGATCCTCGAGATGCTCATAGCACAG GCAAGCCCCATGAAACTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTEST: gi|86904214|gb|CI306632.1|CI306632
genomic: AAGTTGTGCGGGACTACGGGGACATGATCCTCGAGATGCTCATAGCACAGgtttgccact ... gactgagcagGCAAGCCCCATGAAACTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGT
EST: AAGTTGTGCGGGACTACGGGGACATGATCCTCGAGATGCTCATAGCACAG GCAAGCCCCATGAAACTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTEST: gi|29665540|gb|CB661815.1|CB661815
genomic: AAGTTGTGCGGGACTACGGGGACATGATCCTCGAGATGCTCATAGCACAGgtttgccact ... gactgagcagGCAAGCCCCATGAAACTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGT
EST: GGGACATGATCCTCGAGATGCTCATAGCACAG GCAAGCCCCATGAAACTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTEST: gi|29645988|gb|CB650995.1|CB650995
genomic: GGGACATGATCCTCGAGATGCTCATAGCACAGgtttgccact ... gactgagcagGCAAGCCCCATGAAACTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGT
EST: GGGACATGATCCTCGAGATGCTCATAGCACAG GCAAGCCCCATGAAACTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTEST: gi|29664682|gb|CB660957.1|CB660957
genomic: GGGACATGATCCTCGAGATGCTCATAGCACAGgtttgccact ... gactgagcagGCAAGCCCCATGAAACTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGT
EST: AAGTTGTGCGGGACTACGGGGACATGATCCTCGAGATGCTCATAGCACAG GCAAGCCCCATGAAACTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTEST: gi|29664681|gb|CB660956.1|CB660956
genomic: AAGTTGTGCGGGACTACGGGGACATGATCCTCGAGATGCTCATAGCACAGgtttgccact ... gactgagcagGCAAGCCCCATGAAACTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGT
EST: AAGTTGTGCGGGACTACGGGGACATGATCCTCGAGATGCTCATAGCACAG GCAAGCCCCATGAAACTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTEST: gi|29683212|gb|CB679487.1|CB679487
genomic: AAGTTGTGCGGGACTACGGGGACATGATCCTCGAGATGCTCATAGCACAGgtttgccact ... gactgagcagGCAAGCCCCATGAAACTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGT
EST: AAGTTGTGCGGGACTACGGGGACATGATCCTCGAGATGCTCATAGCACAG GCAAGCCCCATGAAACTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGT
genomic: AAGTTGTGCGGGACTACGGGGACATGATCCTCGAGATGCTCATAGCACAGgtttgccact ... gactgagcagGCAAGCCCCATGAAACTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTAATCACGCAATTGGAGCTGAGGGAATTGTTAGTATGGAATGCAAACAAGTTGTGCGGGACTACGGGGACATGATCCTCGAGATGCTCATAGCACAGgtttgccacttgtctgaacattggattgaatttttcttgtgatgcttcatttttttcattgatcttggattctctgaccaaatataaaataattttgtgactgagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG