1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGGAAAAATTGGTGAATGGAGATTTGACAAGAGAGCATACCAAGACAGGCCACCGCCACGAAATCTTACATTGCCCCCTCCAGGAGTACCAGAAAGTGTGgtatgtttactagcaaattaatttgtaaaatacaaaattttcattatgtcgtaaaagaaatattgtaacctttaagatgttaaggtgttattagtgtctt...
species | Oryza sativa |
transcript | LOC_Os01g16600.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CCCCTCCAGGAGTACCAGAAAGTGTG GTTACACTTGTAAAGATGGTAAACGAGGCTACCGCAAACCTTCCAGGGTGGEST: gi|86503402|gb|CI146035.1|CI146035
genomic: CCCCTCCAGGAGTACCAGAAAGTGTGgtatgtttac ... cttaatgcagGTTACACTTGTAAAGATGGTAAACGAGGCTACCGCAAACCTTCCAGGGTGG
EST: CACCGCCACGAAATCTTACATTGCCCCCTCCAGGAGTACCAGAAAGTGTG GTTACACTTGTAAAGATGGTAAACGAGGCTACCGCAAACCTTCCAGGGTGGEST: gi|88246052|gb|CI245901.1|CI245901
genomic: CACCGCCACGAAATCTTACATTGCCCCCTCCAGGAGTACCAGAAAGTGTGgtatgtttac ... cttaatgcagGTTACACTTGTAAAGATGGTAAACGAGGCTACCGCAAACCTTCCAGGGTGG
EST: CACCGCCACGAAATCTTACATTGCCCCCTTCAGGAGTACCAGAAAGTGTG GTTACACTTGTAAAGATGGTAAACGAGGCTACCGCAAACCTTCCAGGGTGG
genomic: CACCGCCACGAAATCTTACATTGCCCCCTCCAGGAGTACCAGAAAGTGTGgtatgtttac ... cttaatgcagGTTACACTTGTAAAGATGGTAAACGAGGCTACCGCAAACCTTCCAGGGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAAAAATTGGTGAATGGAGATTTGACAAGAGAGCATACCAAGACAGGCCACCGCCACGAAATCTTACATTGCCCCCTCCAGGAGTACCAGAAAGTGTGgtatgtttactagcaaattaatttgtaaaatacaaaattttcattatgtcgtaaaagaaatattgtaacctttaagatgttaaggtgttattagtgtctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaa