1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATCACTGACTGAACTTTCATTTAACTGGACGGGCTTCATCAATGCTATGATCTCTAACATCTCATTCACTTACCGGAGCATTTATTCCAAGAAAGCTATGgtttgtgcctcttttgtgctaatctgttgattcatcacctttttttttttgcctcatgggattttgcgttgattcctgattctgtcctttctgacgttaaaaaaccattttcactgttgcag
species | Oryza sativa |
transcript | LOC_Os01g13770.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TCTCTAACATCTCATTCACTTACCGGAGCATTTATTCCAAGAAAGCTATG ACTGATATGGATAGCACCAATGTGTATGCTTATATEST: gi|29661884|gb|CB658159.1|CB658159
genomic: TCTCTAACATCTCATTCACTTACCGGAGCATTTATTCCAAGAAAGCTATGgtttgtgcct ... actgttgcagACTGATATGGATAGCACCAATGTGTATGCTTATAT
EST: TCTCTAACATCTCATTCACTTACCGGAGCATTTATTCCAAGAAAGCTATG ACTGATATGGATAGCACCAATGTGTATGCTTATATCTCAATAATTGCCCTTEST: gi|325493498|gb|JG458022.1|JG458022
genomic: TCTCTAACATCTCATTCACTTACCGGAGCATTTATTCCAAGAAAGCTATGgtttgtgcct ... actgttgcagACTGATATGGATAGCACCAATGTGTATGCTTATATCTCAATAATTGCCCTT
EST: TCTCTAACATCTCATTCACTTACCGGAGCATTTATTCCAAGAAAGCTATG ACTGATATGGATAGCACCAATGTGTATGCTTATATCTCAATAATTGCCCTTEST: gi|29657881|gb|CB654156.1|CB654156
genomic: TCTCTAACATCTCATTCACTTACCGGAGCATTTATTCCAAGAAAGCTATGgtttgtgcct ... actgttgcagACTGATATGGATAGCACCAATGTGTATGCTTATATCTCAATAATTGCCCTT
EST: TCTCTAACATCTCATTCACTTACCGGAGCATTTATTCCAAGAAAGCTATG ACTGATATGGATAGCACCAATGTGTATGCTTATATCTCAATAATTGCCCTT
genomic: TCTCTAACATCTCATTCACTTACCGGAGCATTTATTCCAAGAAAGCTATGgtttgtgcct ... actgttgcagACTGATATGGATAGCACCAATGTGTATGCTTATATCTCAATAATTGCCCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCACTGACTGAACTTTCATTTAACTGGACGGGCTTCATCAATGCTATGATCTCTAACATCTCATTCACTTACCGGAGCATTTATTCCAAGAAAGCTATGgtttgtgcctcttttgtgctaatctgttgattcatcacctttttttttttgcctcatgggattttgcgttgattcctgattctgtcctttctgacgttaaaaaaccattttcactgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA