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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTAGGGGGCGGATTGCTGTCATGCGCCAGGTTATAGATACTTATGAGAAATGGTGTTTAAGGTTGTCGACCTCACGGCTGAACCGTTGGTTGCGTAAGgtaaacatcttgctcaagtgttcggtgcttacattggcattacagaacttgcttttagggtgtgtgacaagtaggaattgcaagtgacatggttgttgag...

Basic information

species Oryza sativa
transcript LOC_Os01g12540.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g12540.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM5G848602_T01 (Zea mays), 5'ss of exon 8
GGGTAGGGGGCGGATTGCTGTCATGCGCCAGGTTATAGATACTTATGAGAAATGGTGTTTAAGGTTGTCGACCTCACGGCTGAACCGTTGGTTGCGTAAGgtaaacatcttgctcaagtgttcggtgcttacattggcattacagaacttgcttttagggtgt-gtgacaagtaggaattgcaagtgacatggttgttgag-
||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||| || |||||||| ||||||||||||||||||||||||||  |||| |         |  ||   |||            || || |  |      || | | | |   ||   |||  || | | | |     
GGGGAGGGGGCGGATTGCTGTGATGCGCCAGGTTATAGATACCTATGAGAAGTGGTGTTTAAGATTGTCAACATCACGGCTCAACCGTTGGTTGCGTAAGgtaaacattctgcttacagaaattttatttggtttgtttgcgtgtgtgtt-ctgtaggaacacagttatatggattgataataag-aacttagatctcatcc

upper sequence: LOC_Os01g12540.2 (Oryza sativa), 5'ss of exon 7
lower sequence: Vv16s0022g01890.t01 (Vitis vinifera), 5'ss of exon 8
GGGTAGGGGGCGGATTGCTGTCATGCGCCAGGTTATAGATACTTATGAGAAATGGTGTTTAAGGTTGTCGACCTCACGGCTGAACCGTTGGTTGCGTAAGgtaaacatcttgctcaagtgttcggt---gcttacattggcattacagaacttgc-ttttagggtgtgtgacaagtaggaattg-caagtgacatggttgttgag
||| |||||  | ||  |||| ||||||||||| || ||||| ||||| |||||||||||||| ||||| ||  | || || |||||||||||||| ||||| |  ||     | |    ||  ||   ||  |   |   | ||   || |||  |||||   | | |  |   | |    |  | ||                
GGGAAGGGGAAGAATATCTGTGATGCGCCAGGTCATTGATACATATGAAAAATGGTGTTTAAGATTGTCAACTGCTCGTCTTAACCGTTGGTTGCGCAAGgtcagtatgacaataatccctttagtcctgcccatccttcaaatatgcaagttgggttttaatctctctttcgctttgcttctctctag----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218496918|gb|FG952342.1|FG952342
EST:     CCGTTGGTTGCGTAAG                         GTTATGAGCAGACATTCCTGGAAAGACTCAGCTACCCAGCCAAAAGTGAAG
genomic: CCGTTGGTTGCGTAAGgtaaacatct ... cccgtgacagGTTATGAGCAGACATTCCTGGAAAGACTCAGCTACCCAGCCAAAAGTGAAG