1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGGAGCAATTGCTACAATTGCAGCCTGCAGTGGAATGTTCATTCCGATGTTCATCGCATGCAGCATTTTTCTTCTTGAGCTGCTCTTGGTAATATTTCAGgtaagttattgcttggattacttcctcttttattttttttttggagacaatcacttccttttgcttcaattattttttatatctggtggttgttacactt...
species | Oryza sativa |
transcript | LOC_Os01g11260.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TCATCGCATGCAGCATTTTTCTTCTTGAGCTGCTCTTGGTAATATTTCAG GTCCCTTTTCAGATGGCTAAGAAGCACTTCCTTGGGACAAATAGATATCCCEST: gi|58662833|gb|CK051519.1|CK051519
genomic: TCATCGCATGCAGCATTTTTCTTCTTGAGCTGCTCTTGGTAATATTTCAGgtaagttatt ... tctctcacagGTCCCTTTTCAGATGGCTAAGAAGCACTTCCTTGGGACAAATAGATATCCC
EST: TCATCGCATGCAGCATTTTTCTTCTTGAGCTGCTCTTGGTAATATTTCAG GTCCCTTTTCAGATGGCTAAGAAGCACTTCCTTGGGACAAATAGATATCCCEST: gi|88962456|gb|CI097608.1|CI097608
genomic: TCATCGCATGCAGCATTTTTCTTCTTGAGCTGCTCTTGGTAATATTTCAGgtaagttatt ... tctctcacagGTCCCTTTTCAGATGGCTAAGAAGCACTTCCTTGGGACAAATAGATATCCC
EST: TCATCGCATGCAGCATTTTTCTTCTTTAGCTGCTCTTGGTAATATTTCAG GTCCCTTTTCAGATGGCTAAGAAGCACTTCCTTGGGACAAATAGATATCCCEST: gi|89166186|gb|CI103276.1|CI103276
genomic: TCATCGCATGCAGCATTTTTCTTCTTGAGCTGCTCTTGGTAATATTTCAGgtaagttatt ... tctctcacagGTCCCTTTTCAGATGGCTAAGAAGCACTTCCTTGGGACAAATAGATATCCC
EST: TCATCGCATGCAGCATTTTTCTTCATGAGCTGCTCTTGGTAATATTTCAG GTCCCTTTTCAGATGGCTAAGAAGCACTTCCTTGGGACAAATAGATATCCC
genomic: TCATCGCATGCAGCATTTTTCTTCTTGAGCTGCTCTTGGTAATATTTCAGgtaagttatt ... tctctcacagGTCCCTTTTCAGATGGCTAAGAAGCACTTCCTTGGGACAAATAGATATCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAGCAATTGCTACAATTGCAGCCTGCAGTGGAATGTTCATTCCGATGTTCATCGCATGCAGCATTTTTCTTCTTGAGCTGCTCTTGGTAATATTTCAGgtaagttattgcttggattacttcctcttttattttttttttggagacaatcacttccttttgcttcaattattttttatatctggtggttgttacactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcctc