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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCTTTCTGTCATTGTGGCAAGGAGCAGAGACGGTTCTACGGTGTGCTATCCTGTTGTTGAAACCATCCACAAgtaagattttcttttatgattaccttgtgttattgattggcattgtctgtgttgtgcttttgccctttggaattcccaaaatatgaatccttagattggaacatccag

Basic information

species Oryza sativa
transcript LOC_Os01g10280.4
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g10280.4 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G133121_T02 (Zea mays), 5'ss of exon 7
GAGCTTTCTGTCATTGTGGCAAGGAGCAGAGACGGTTCTACGGTGTGCTATCCTGTTGTTGAAACCATCCACAAgtaagattttcttttatgattaccttgtg--ttattgattggcattgtctgtgttgtgcttttgcc----ctttggaattcccaaaatatgaatccttagattggaacatccag
||||||||||| |||||||||||||||||||||   ||||| || |||||||||||||| |||||  | ||||||||||| | | |||||    ||  ||||   |||||  |    ||| | ||   |    ||||  |    ||||  |||| | |||| | |||    |   |  |||| | |||
GAGCTTTCTGTAATTGTGGCAAGGAGCAGAGACAACTCTACTGTCTGCTATCCTGTTGTGGAAACAGTTCACAAgtaagactgttttttaatgataagttgttatttattcttgtttattatttgaactacatttttctctatacttttaaatttcgaaaaca-gaaataatgtgtgtgaacgttcag

upper sequence: LOC_Os01g10280.4 (Oryza sativa), 5'ss of exon 7
lower sequence: AT2G37690.1 (Arabidopsis thaliana), 5'ss of exon 8
GAGCTTTCTGTCATTGTGGCAAGGAGCAGAGACGGTTCTACGGTGTGCTATCCTGTTGTTGAAACCATCCACAAgtaagattttcttttatgattaccttgtg-ttattgattggcattgtctgtgttgtgcttttgccctttggaattcccaaaatatgaatccttagattggaacatccag
||| |  |||| |||||||| ||| | ||||| ||||||| ||| || ||||| |||||||||||||| |||| |||  | |         || ||  || |  ||||    | | |  || ||        | || |  | | |  |||    ||||     ||||  | || |   || ||
GAGTTAGCTGTTATTGTGGCTAGGGGGAGAGATGGTTCTATGGTTTGTTATCCCGTTGTTGAAACCATTCACAGgta--actcaaaagcgcgactaaattttaattataagattgaaaggtatgatacaaattgttactttctagt-ttctactaataca---ccttgaaatgca--ttctag

upper sequence: LOC_Os01g10280.4 (Oryza sativa), 5'ss of exon 7
lower sequence: Vv14s0081g00240.t01 (Vitis vinifera), 5'ss of exon 7
GAGCTTTCTGTCATTGTGGCAAGGAGCAGAGACGGTTCTACGGTGTGCTATCCTGTTGTTGAAACCATCCACAAgtaagattttcttttatgat----taccttgtgttattgattggcattgtctgtgttgtgctt-----------ttgccctttggaatt---cccaaaatatgaatccttagattggaacatccag-----------------------
|||||  | ||||||||||||||  | ||||||  |||||   |||||||||||||||||||||| || ||||||||||||  |   ||  | |    ||  |  ||||  |  ||| ||||   | |  ||   ||           |||| |  || | ||   |  |  |||| | || |||  |    ||||                           
GAGCTGGCCGTCATTGTGGCAAGAGGAAGAGACAATTCTATTTTGTGCTATCCTGTTGTTGAAACTATTCACAAgtaagatgcttgattcagttgttatatatcctgttggtagttgccatttcttcttctgattttcaaaacctttgttgcacagtgtattttagctgatgatattactctttatttctttacatgttttcaaggatttctgtattttgcag