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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCGATACTCTTCCCTACTACTGGACAACGGTCTTTGGCTGATGAGATGGCCAATAGTGATTTTGATGGTGACATCTACTGGGTCTCATTAAACCCAAAGgtatgttaattcctgattgacattttaccgtgaagtttattggaaatcatcgtcttgggagatgcacctaatattgtttttgtgcttgattatcttttat...

Basic information

species Oryza sativa
transcript LOC_Os01g10140.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g10140.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G327247_T01 (Zea mays), 5'ss of exon 3
TGCGATACTCTTCCCTACTACTGGACAACGGTCTTTGGCTGATGAGATGGCCAATAGTGATTTTGATGGTGACATCTACTGGGTCTCATTAAACCCAAAGgtatgttaattcctgattgacattttac-cgtgaagttt----attggaaatcatcgtct-tgggagatgcacctaatattgtttttgtgcttgattatcttttat
||| ||||| || |||||| |||||||| | || |||||||||||||||||||||||||||||||||||||||   | ||||||||||  ||||   | |||  ||| ||| ||| |||   || ||    |    |||    | || ||  |  | ||| |||||| || | || |    |||  ||||   | |          
TGCAATACTTTTTCCTACTTCTGGACAAAGATCATTGGCTGATGAGATGGCCAATAGTGATTTTGATGGTGACGAGTTCTGGGTCTCAAGAAACAATATGgtcagttcatttctgtttgtttttataaatattttattttaccactgcaatgccacatctgtgggaggtg-atctgagggggttgctgtgggaggtcgcgg-----

upper sequence: LOC_Os01g10140.2 (Oryza sativa), 5'ss of exon 7
lower sequence: Vv11s0016g03220.t01 (Vitis vinifera), 5'ss of exon 13
TGCGATACTCTTCCCTACTACTGGACAACGGTCTTTGGCTGATGAGATGGCCAATAGTGATTTTGATGGTGACATCTACTGGGTCTCATTAAACCCAAAGgtatgttaattcctgattgacattttacc-gtgaagtttattgga--aatcatcgtcttgggagatgcacctaatattgtttttgtgcttgattatcttttat
||| ||| | || || | ||  || |  || || || || ||||| ||||| || |||||||||||||||||||| |||||||||||   |||||   |||| || |  ||     ||| ||  | ||  || || || |||| |  | | ||  | |    |  ||    |   |     | ||  | ||  ||| ||||| 
TGCCATATTTTTTCCCATTAAAGGCCCTCGATCATTAGCAGATGAAATGGCAAACAGTGATTTTGATGGTGACATGTACTGGGTCTCGAGAAACCAGCAGgt-tggtggttttgccttgtcagctgacaagttaatttaattgcattattgattatttgttcaattgtttatgtgaagaagtctggacctg--tattttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88363324|gb|CI643182.1|CI643182
EST:     TTTGATGGTGACATCTACTGGGTCTCATTAAACCCAAAG                         CTGTTAGAACATTTTAAACCTTCGAAACCATGGGTTCCAGCTATTACACCA
genomic: TTTGATGGTGACATCTACTGGGTCTCATTAAACCCAAAGgtatgttaat ... gtcttttcagCTGTTAGAACATTTTAAACCTTCGAAACCATGGGTTCCAGCTATTACACCA
EST: gi|58670199|gb|CK058885.1|CK058885
EST:     CCAATAGTGATTTTGATGGTGACATCTACTGGGTCTCATTAAACCCAAAG                         CTGTTAGAACATTTTAAACCTTCGAAAGCATGGGGTTCCAGCTATTACACC
genomic: CCAATAGTGATTTTGATGGTGACATCTACTGGGTCTCATTAAACCCAAAGgtatgttaat ... gtcttttcagCTGTTAGAACATTTTAAACCTTCGAAACCATGGG-TTCCAGCTATTACACC
EST: gi|58656974|gb|CK045654.1|CK045654
EST:     CCAATAGTGATTTTGATGGTGACATCTACTGGGTCTCATTAAACCCAAAG                         CTGTTAGAACATTTTAAACCTTCGAAACCATGGGTTCCAGCTATTACACCA
genomic: CCAATAGTGATTTTGATGGTGACATCTACTGGGTCTCATTAAACCCAAAGgtatgttaat ... gtcttttcagCTGTTAGAACATTTTAAACCTTCGAAACCATGGGTTCCAGCTATTACACCA