1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTGTGGTGGAGTCATGGGAAAATACGCAGCTGGTGGAGAATTGAAGCCTCCAACAACTGgttggtaaaatcagcaatggaattttctatcgtgaattttttataattattgtaacattaattactcccatgtctttttattctgttgagataccatgtg...
species | Oryza sativa |
transcript | LOC_Os01g08700.6 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGTCATGGGAAAATACGCAGCTGGTGGAGAATTGAAGCCTCCAACAACTG CTTACAGCCGAGGATCTGGGAAGCACCCACAACTTATGCCATCCACGCCCAEST: gi|29678221|gb|CB674496.1|CB674496
genomic: AGTCATGGGAAAATACGCAGCTGGTGGAGAATTGAAGCCTCCAACAACTGgttggtaaaa ... ggtcattcagCTTACAGCCGAGGATCTGGGAAGCACCCACAACTTATGCCATCCACGCCCA
EST: GGAGAATTGAAGCCTCCAACAACTG CTTACAGCCGAGGATCTGGGAAGCACCCACAACTTATGCCATCCACGCCCAEST: gi|29642016|gb|CB647023.1|CB647023
genomic: GGAGAATTGAAGCCTCCAACAACTGgttggtaaaa ... ggtcattcagCTTACAGCCGAGGATCTGGGAAGCACCCACAACTTATGCCATCCACGCCCA
EST: AGTCATGGGAAAATACGCAGCTGGTGGAGAATTGAAGCCTCCAACAACTG CTTACAGCCGAGGATCTGGGAAGCACC-ACAACTTATGCCATCEST: gi|29636922|gb|CB641931.1|CB641931
genomic: AGTCATGGGAAAATACGCAGCTGGTGGAGAATTGAAGCCTCCAACAACTGgttggtaaaa ... ggtcattcagCTTACAGCCGAGGATCTGGGAAGCACCCACAACTTATGCCATC
EST: AGTCATGGGAAAATACGCAGCTGGTGGAGAATTGAAGCCTCCAACAACTG CTTACAGCCGAGGATCTGGGAAGCACCCACAACTTATGCCATCCACGCCCAEST: gi|29646260|gb|CB651267.1|CB651267
genomic: AGTCATGGGAAAATACGCAGCTGGTGGAGAATTGAAGCCTCCAACAACTGgttggtaaaa ... ggtcattcagCTTACAGCCGAGGATCTGGGAAGCACCCACAACTTATGCCATCCACGCCCA
EST: AGTCATGGGAAAATACGCAGCTGGTGGAGAATTGAAGCCTCCAACAACTG CTTACAGCCGAGGATCTGGGAAGCACCCACAACTTATGCCATCCACGCCCAEST: gi|29636923|gb|CB641932.1|CB641932
genomic: AGTCATGGGAAAATACGCAGCTGGTGGAGAATTGAAGCCTCCAACAACTGgttggtaaaa ... ggtcattcagCTTACAGCCGAGGATCTGGGAAGCACCCACAACTTATGCCATCCACGCCCA
EST: AGTCATGGGAAAATACGCAGCTGGTGGAGAATTGAAGCCTCCAACAACTG CTTACAGCCGAGGATCTGGGAAGCACCCACAACTTATGCCATCCACGCCCAEST: gi|33800019|gb|CF325875.1|CF325875
genomic: AGTCATGGGAAAATACGCAGCTGGTGGAGAATTGAAGCCTCCAACAACTGgttggtaaaa ... ggtcattcagCTTACAGCCGAGGATCTGGGAAGCACCCACAACTTATGCCATCCACGCCCA
EST: AGTCATGGGAAAATACGCAGCTGGTGGAGAATTGAAGCCTCCAACAACTG CTTACAGCCGAGGATCTGGGAAGCACCCACAACTTATGCCATCCACGCCCAEST: gi|2428589|gb|C73052.1|C73052
genomic: AGTCATGGGAAAATACGCAGCTGGTGGAGAATTGAAGCCTCCAACAACTGgttggtaaaa ... ggtcattcagCTTACAGCCGAGGATCTGGGAAGCACCCACAACTTATGCCATCCACGCCCA
EST: AGTCATGGGAAAATACGCAGCTGGTGGAGAATTGAAGCCTCCAACAACTG CTTACAGCCGAGGATCTGGGAAGCACCCACAACTTATGCCATCCACGCCCAEST: gi|58609196|gb|CK037229.1|CK037229
genomic: AGTCATGGGAAAATACGCAGCTGGTGGAGAATTGAAGCCTCCAACAACTGgttggtaaaa ... ggtcattcagCTTACAGCCGAGGATCTGGGAAGCACCCACAACTTATGCCATCCACGCCCA
EST: AGTCATGGGAAAATACGCAGCTGGTGGAGAATTGAAGCCTCCAACAACTG CTTACAGCCGAGGATCTGGGAAGCACCCACAACTTATGCCATCCACGCCCA
genomic: AGTCATGGGAAAATACGCAGCTGGTGGAGAATTGAAGCCTCCAACAACTGgttggtaaaa ... ggtcattcagCTTACAGCCGAGGATCTGGGAAGCACCCACAACTTATGCCATCCACGCCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTGGTGGAGTCATGGGAAAATACGCAGCTGGTGGAGAATTGAAGCCTCCAACAACTGgttggtaaaatcagcaatggaattttctatcgtgaattttttataattattgtaacattaattactcccatgtctttttattctgttgagataccatgtg
- - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - TGAAGC