Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaataatacgaacacagtagaacgattgtacagacatgattacccgcctgattcactgaataccgtctccctttctttgttctgtag

Basic information

species Oryza sativa
transcript LOC_Os01g05490.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g05490.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G018177_T01 (Zea mays), 5'ss of exon 8
GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaataatacgaacacagtagaacgattg------tacagacatgattacccgcctgattcactgaat--accgtctc-cctttctttgttctgtag----------------------------
|||| ||||||| |||||||||||| |||||||||||| |||||||||| |||||||| || || || |||||||| |||||||||| |   || |  ||  ||| |  ||  |||      |          |||      |||  ||  |||   ||    |  ||| | |  |     |                              
GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAGgtaacggg-aaaaaaaatccaggatgacagttgatgtcctgtctgtccctttatttttgtgacccaaagaaagaacaaaatgacctatgtcagcaacctgactgtttcctcccatatctttgtctccag

upper sequence: LOC_Os01g05490.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G030784_T01 (Zea mays), 5'ss of exon 8
GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaataatacg--aacacagtagaacgattgtacagacatgatt--acccgcctgattcactgaat--accgtctccctttctttgttctgtag--------------------------
| || ||||||| |||||||||||| ||||| |||||| |||||||||| ||||||||||| |||||||| ||||| |||||||||| ||| ||| |   || || || ||     |||       |  ||  |      | |  ||  |||   ||   ||  ||  |  ||||    |                           
GCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaaatccagaaagacggttgatgtcctgtttctttttccttttatttttataaaccaaagaaacaacgaactggctgcccgtgttgctgactgtttccaaccctatctcgtctgcag

upper sequence: LOC_Os01g05490.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G370275_T01 (Zea mays), 5'ss of exon 7
GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaataatacg--aacacagtagaacgattgt----------------acagac---atgattacccgcctgattcactgaataccgtctccctttctttgttctgtag-------
| || ||||||   ||||||| ||| ||||| |||||| |||||||||| ||||||||||| |||||||| ||||| |||||||||| ||| ||| |   || || || ||     |||                | | ||   |  |  | |   |||  |  |  |||   || |   ||||||  || | |         
GCTCTGTAACTACCGCGAACTACAAAGAGCTAGCAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaaattcagaaagacggttgatgtcctgtttctttttttctttttataaaccaaagaaacaacgaactggctgccctaatgatgtttgattttcttatttatatcctttgtag

upper sequence: LOC_Os01g05490.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G435244_T01 (Zea mays), 5'ss of exon 7
GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaataatacg--aacacagtagaacgattgtacagacatgattacccgcctgattcactgaat--accgtctccctttctttgttctgtag----
| || ||||||   ||||||| ||| ||||| |||||| |||||||||| ||||||||||| |||||||| ||||| |||||||||| ||| ||| |   || ||  | ||     |||       |  ||       | |  ||  |||   ||   ||  ||  | |  |  |||      
GCTCTGTAACTACCGCGAACTACAAAGAGCTAGCAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaaatccagaaagacgattgatgtcctgtttctttttttttctttttataaaccaaagaaacaacgaactggctgccctaatgatgtttgatt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|55442464|gb|CV734550.1|CV734550
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88416347|gb|CI540888.1|CI540888
EST:     AGCAAAGCCTGATGTTGATGTTTTTGTCGTCGGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: AGCAAAGCCTGATGTTGATGGTTTTCTCGTC-GGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|58692189|gb|CK080876.1|CK080876
EST:     CAGCAAAGCCTGATCTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|13806699|gb|AU181634.1|AU181634
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|3761375|gb|C98623.1|C98623
EST:     ATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: ATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|30226725|gb|CB964617.1|CB964617
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88907449|gb|CI090243.1|CI090243
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88548876|gb|CI478710.1|CI478710
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88365180|gb|CI540492.1|CI540492
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88476322|gb|CI413593.1|CI413593
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|86883540|gb|CI338080.1|CI338080
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88997963|gb|CI037848.1|CI037848
EST:     CAGCCAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGCATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88322429|gb|CI540397.1|CI540397
EST:     CAGCAAAGCCTGATNTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88281321|gb|CI402717.1|CI402717
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|13896033|gb|AU182369.1|AU182369
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|55440349|gb|CV733484.1|CV733484
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|313079507|gb|HO213065.1|HO213065
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|86883877|gb|CI328808.1|CI328808
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88516871|gb|CI444451.1|CI444451
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGT-GTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|58586868|gb|CF985176.1|CF985176
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|86261062|gb|CI004627.1|CI004627
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|33663594|gb|CF294561.1|CF294561
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88263078|gb|CI366852.1|CI366852
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88509826|gb|CI437332.1|CI437332
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|13896024|gb|AU182360.1|AU182360
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88384045|gb|CI548386.1|CI548386
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88485416|gb|CI422687.1|CI422687
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|157650012|gb|EX449646.1|EX449646
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGGGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88843726|gb|CI010984.1|CI010984
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|30228883|gb|CB966774.1|CB966774
EST:     CAGCCAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88486380|gb|CI423651.1|CI423651
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88551873|gb|CI481966.1|CI481966
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88284199|gb|CI405645.1|CI405645
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCNCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88456433|gb|CI561036.1|CI561036
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88532685|gb|CI462185.1|CI462185
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|11233263|gb|AU164704.1|AU164704
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88851375|gb|CI404427.1|CI404427
EST:     AGCAAAGCCTGATGTTGATGGTTTTCTCGTCG-TGGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: AGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGG-TGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|13805816|gb|AU181212.1|AU181212
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88984472|gb|CI015023.1|CI015023
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|15847747|gb|BI796023.1|BI796023
EST:     GCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: GCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|30226751|gb|CB964643.1|CB964643
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88541953|gb|CI471257.1|CI471257
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|13806462|gb|AU181530.1|AU181530
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|30227639|gb|CB965531.1|CB965531
EST:     TGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: TGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|30227561|gb|CB965453.1|CB965453
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88522140|gb|CI449877.1|CI449877
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88437080|gb|CI524030.1|CI524030
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTNAAG                         CCTGAATTCATCNACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|58696173|gb|CK084860.1|CK084860
EST:     GCAAAGCCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCGTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: GCAAAG-CCTGATGTTGATGGTTTTCTCGTCGGTGGTGC-TTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|313079506|gb|HO213064.1|HO213064
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|55431263|gb|CV728641.1|CV728641
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88276696|gb|CI397498.1|CI397498
EST:     CAGCCAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTTCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCCCCACCCTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88522177|gb|CI449919.1|CI449919
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88519924|gb|CI446476.1|CI446476
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88553463|gb|CI483577.1|CI483577
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88525492|gb|CI453949.1|CI453949
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88553915|gb|CI484057.1|CI484057
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88509886|gb|CI437392.1|CI437392
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88510100|gb|CI437606.1|CI437606
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88466892|gb|CI539688.1|CI539688
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88557252|gb|CI487645.1|CI487645
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|13806014|gb|AU181310.1|AU181310
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88448015|gb|CI539018.1|CI539018
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88290009|gb|CI547646.1|CI547646
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCGGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88477093|gb|CI414364.1|CI414364
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|2797511|gb|AA750805.1|AA750805
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88221091|gb|CI221047.1|CI221047
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88836596|gb|CI010852.1|CI010852
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|55441963|gb|CV734302.1|CV734302
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88560271|gb|CI490918.1|CI490918
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|88986640|gb|CI033783.1|CI033783
EST:     CAGCCAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|55438977|gb|CV732789.1|CV732789
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|86525455|gb|CI165661.1|CI165661
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
EST: gi|33687308|gb|CF315547.1|CF315547
EST:     CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG                         CCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT
genomic: CAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 512

GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaata ... tgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGATCTTCACCCCATTCACCTTCGGCGTGGGAAGATGTCTGAAGAGGATCATA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGgtaaagaataatacgaacacagtagaacgattgtacagacatgattacccgcctgattcactgaataccgtctccctttctttgttctgtag

- - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG