Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGACAAGAACTTCAATGAAGCTGAAATGTTTCGAATGATCGAAGCTGCGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggactgaacataatctcatcacatctgattgaacctgaacctgttcattttaatcacatctctcctttcag

Basic information

species Oryza sativa
transcript LOC_Os01g02040.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g02040.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM5G872442_T02 (Zea mays), 5'ss of exon 8
GCTGGACAAGAACTTCAATGAAGCTGAAATGTTTCGAATGATCGAAGCTGCGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtata---ggactgaacataa-----------tctcatca---catctgat-tgaacctgaacctg-----ttcattttaatcacatctctcctttcag
|||  ||||||||| ||| ||||  || ||||| || |||||||||||||| |||||||||||||| ||||||||||| ||||||||  ||||||||||||||||   |||   || |  |           ||||||||    | | ||     ||| |||||||     |||        ||| |  |||||  |||
GCTTAACAAGAACTACAACGAAGTCGAGATGTTCCGTATGATCGAAGCTGCTGCAGCTTGCATTCGGCATTCAGCATCCAGGAGACCGAGGATGAGCCAGgtatacaaggataaaagaagagcgcgtgagcatctcatcagagtaccggacacagaccagaacctgacattttccccccctccacttgcctcctcccag

upper sequence: LOC_Os01g02040.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G355636_T01 (Zea mays), 5'ss of exon 8
GCTGGACAAGAACTTCAATGAAGCTGAAATGTTTCGAATGATCGAAGCTGCGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtata-ggactgaacataatct---cat------cacatctgattgaacct----gaacctg---ttcattttaatcacatctctcctttcag
|||  | | ||||| ||||||||  |||||||| || |||||||||||||| ||||| || ||||||||||||||||| ||||| || ||||||||||||||||| ||| | || | ||      |||      ||||||| ||   ||      ||||||     |   |||   ||| |  ||| | ||||
GCTTAATAGGAACTACAATGAAGTCGAAATGTTCCGTATGATCGAAGCTGCTGCAGCCTGTATTCGACATTCAGCATCCAGGAGGCCTCGGATGAGCCAGgtataaggattaaaaaaaagacaggcatgcaatgcacatctcatcagacagacgagaacctaacactgccttttcccacctgcctcatctcag

upper sequence: LOC_Os01g02040.1 (Oryza sativa), 5'ss of exon 7
lower sequence: AT1G26150.1 (Arabidopsis thaliana), 5'ss of exon 7
GCTGGACAAGAACTTCAATGAAGCTGAAATGTTTCGAATGATCGAAGCTGCGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggactgaacataatctcatcacatctgattgaacctgaacctgttcattttaatcacatctctccttt-cag
||| |  |  ||||    ||  | |||||||||| ||||||| ||||| ||||||||||| ||||| ||||||||  | | ||||||||| ||||| || ||| ||  ||   | ||||     || || |  ||   | |   ||   ||     | |||||||  |  ||| |||
GCTAGGTAGAAACTATGTTGGTGTTGAAATGTTTAGAATGATTGAAGCAGCGGCAGCTTGTATTCGCCATTCAGCTACAAAGAGACCCCGAATGAGTCAAgtacagaccttctcttaataa-gccagatttttttcttctt--tccaaatcgaa--actcacatcaattttttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58678779|gb|CK067466.1|CK067466
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|86437136|gb|CI118858.1|CI118858
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|88236062|gb|CI235264.1|CI235264
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|88231217|gb|CI231066.1|CI231066
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|86437496|gb|CI119218.1|CI119218
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|88197800|gb|CI197650.1|CI197650
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|86541720|gb|CI181926.1|CI181926
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|87013927|gb|CI271318.1|CI271318
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|86845787|gb|CI347062.1|CI347062
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|86541696|gb|CI181902.1|CI181902
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|87034702|gb|CI189326.1|CI189326
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|87041394|gb|CI196016.1|CI196016
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|88233906|gb|CI233755.1|CI233755
EST:     CGGCAGCTTGCATTCGGCATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|86479966|gb|CI122599.1|CI122599
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|88234363|gb|CI234212.1|CI234212
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|88232310|gb|CI230768.1|CI230768
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|88234457|gb|CI234306.1|CI234306
EST:     CGGCAGCTTGCATTCGACGTTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|87024364|gb|CI274184.1|CI274184
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|86858514|gb|CI273086.1|CI273086
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|66929099|gb|CX115947.1|CX115947
EST:     CGGCAG-TTGCATTCGACAT-CAGCTT-TAAGAGACCC-GGATGAGC-AG                         GTGGTG-GTGTTCT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCT
EST: gi|86433786|gb|CI094129.1|CI094129
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|88956153|gb|CI092441.1|CI092441
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|87017851|gb|CI273873.1|CI273873
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|88197991|gb|CI197841.1|CI197841
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|88235287|gb|CI236489.1|CI236489
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|86478718|gb|CI121351.1|CI121351
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|14191546|gb|AU183757.1|AU183757
EST:     CGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|87041598|gb|CI196220.1|CI196220
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|87021491|gb|CI274098.1|CI274098
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|86538348|gb|CI178554.1|CI178554
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|86514733|gb|CI157366.1|CI157366
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|86481600|gb|CI124233.1|CI124233
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|86477444|gb|CI120077.1|CI120077
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|87036986|gb|CI191608.1|CI191608
EST:     CGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|27576561|gb|CA999255.1|CA999255
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|87021483|gb|CI274090.1|CI274090
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|89174423|gb|CI110621.1|CI110621
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|86483565|gb|CI126198.1|CI126198
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|86481436|gb|CI124069.1|CI124069
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|87021141|gb|CI271948.1|CI271948
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|89164465|gb|CI101553.1|CI101553
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|87042014|gb|CI196636.1|CI196636
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|86518528|gb|CI158734.1|CI158734
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|86525079|gb|CI165285.1|CI165285
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCCATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|86480472|gb|CI123105.1|CI123105
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|86433765|gb|CI094108.1|CI094108
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|86436777|gb|CI118499.1|CI118499
EST:     CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
genomic: CGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT
EST: gi|88265895|gb|CI376797.1|CI376797
EST:     CATCTAGGAGACCCCGGATGAGCCAG                         GTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAAT-GTATT
genomic: CATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 71 (upstream exon), 60 (downstream exon)
Score: 11

GCTGGACAAGAACTTCAATGAAGCTGAAATGTTTCGAATGATCGAAGCTGCGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggact ... ctcctttcagGTGGTGCGTGTTCTTGATAGCTTAGCTGACGTCGATCTAAGCAATGGTATTCAGCCTGGTAAGAGCGAAATGTTCAATGTGGCAAACACGGCAGAAATCA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGGACAAGAACTTCAATGAAGCTGAAATGTTTCGAATGATCGAAGCTGCGGCAGCTTGCATTCGACATTCAGCATCTAGGAGACCCCGGATGAGCCAGgtataggactgaacataatctcatcacatctgattgaacctgaacctgttcattttaatcacatctctcctttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA