1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGAGTTATTGACATCGAAAGAGTTGGGGAAATGCAGGAGTCGAGTAGTTCTAGACAGGCTTAATGGATGAAAGCTGTGGATGCTATTGGTCATTGAAATgtgattgctcttagtctctgactcatggctgattctacacaaatgtgcttgtaatttttatccctttcaatagttccgcataaagaatttttttgttgcag
species | Oryza sativa |
transcript | LOC_Os01g01040.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTAGACAGGCTTAATGGATGAAAGCTGTGGATGCTATTGGTCATTGAAAT CAGCATCATTGGAGCGGCATACCGTGGCTTGGCTATATGGCAGGTCCAACAEST: gi|86503759|gb|CI146392.1|CI146392
genomic: CTAGACAGGCTTAATGGATGAAAGCTGTGGATGCTATTGGTCATTGAAATgtgattgctc ... tttgttgcagCAGCATCATTGGAGCGGCATACCGTGGCTTGGCTATATGGCAGGTCCAACA
EST: CTAGACAGGCTTAATGGATGAAAGCTGTGGATGCTATTGGTCATTGAAAT ---CATCATTGGAGCGGCATACCGTGGCTTGGCTATATGGCAGGTCCAACAEST: gi|27545937|gb|CA764088.2|CA764088
genomic: CTAGACAGGCTTAATGGATGAAAGCTGTGGATGCTATTGGTCATTGAAATgtgattgctc ... tttgttgcagCAGCATCATTGGAGCGGCATACCGTGGCTTGGCTATATGGCAGGTCCAACA
EST: GGATGAAAGCTGTGGATGCTATTGGTCATTGAAAT NAGCATCATTGGAGCGGCATACCGTGGCTTAGCTATATGGCAGGTTCAACAEST: gi|29616468|gb|CB621480.1|CB621480
genomic: GGATGAAAGCTGTGGATGCTATTGGTCATTGAAATgtgattgctc ... tttgttgcagCAGCATCATTGGAGCGGCATACCGTGGCTTGGCTATATGGCAGGTCCAACA
EST: CTAGACAGGCTTAATGGATGAAAGCTGTGGATGCTATTGGTCATTGAAAT CA---TCATTGGAGCGGCATACCGTGGCTTGGCTATATGGCAGGTCCAACAEST: gi|29646206|gb|CB651213.1|CB651213
genomic: CTAGACAGGCTTAATGGATGAAAGCTGTGGATGCTATTGGTCATTGAAATgtgattgctc ... tttgttgcagCAGCATCATTGGAGCGGCATACCGTGGCTTGGCTATATGGCAGGTCCAACA
EST: CTAGACAGGCTTAATGGATGAAAGCTGTGGATGCTATTGGTCATTGAAAT CAGCATCATTGGAGCGGCATACCGTGGCTTGGCTATATGGCAGGTCCAACA
genomic: CTAGACAGGCTTAATGGATGAAAGCTGTGGATGCTATTGGTCATTGAAATgtgattgctc ... tttgttgcagCAGCATCATTGGAGCGGCATACCGTGGCTTGGCTATATGGCAGGTCCAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGTTATTGACATCGAAAGAGTTGGGGAAATGCAGGAGTCGAGTAGTTCTAGACAGGCTTAATGGATGAAAGCTGTGGATGCTATTGGTCATTGAAATgtgattgctcttagtctctgactcatggctgattctacacaaatgtgcttgtaatttttatccctttcaatagttccgcataaagaatttttttgttgcag
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