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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAAGGATGATGGTTTGCGCATCGAGAAAAATGCTCTTCATGACAACTGGGATGATGCCGAGGGGTACTATAgtaagttccaccatatgctaaccttctcccttttagttttcttttgttaactgtggtcaacaaactattctttgctgtgtccatttgtttccattcctaacttatgcaaaactttgcag

Basic information

species Oryza sativa
transcript LOC_Os12g44330.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g44330.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G147811_T01 (Zea mays), 5'ss of exon 6
GGCAAGGATGATGGTTTGCGCATCGAGAAAAATGCTCTTCATGACAACTGGGATGATGCCGAGGGGTACTATAgtaagttccaccatatgctaaccttctcccttttagttttcttttgttaactgtggtcaacaaactattctttgctgtgtccatttgtttccattcctaacttatgcaaaactttgcag
|| |||||||||||||||| || |||| |||||||||||||||||||||||||||||| || |||||||| |||||||| |||||| | | | || |||| ||| | || | || | || || ||| ||||| || || || || ||| | | |||||
GGAAAGGATGATGGTTTGCATATTGAGAGAAATGCTCTTCATGACAACTGGGATGATGCAGATGGGTACTACAgtaagtt-------atgctatctt-----atgttcatttttccttgccagct-----tattgttctctcctgtgttgt--ccattcattcatttttcttgtttttgct--attgtgcag

upper sequence: LOC_Os12g44330.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G151236_T03 (Zea mays), 5'ss of exon 5
GGCAAGGATGATGGTTTGCGCATCGAGAAAAATGCTCTTCATGACAACTGGGATGATGCCGAGGGGTACTATAgtaagttccaccatatgctaaccttctcccttttagttttcttttgttaactgtggtcaacaaactattctttgctgtgtccatttgtttccattcctaacttatgcaaaactttgcag----
||||||| ||||||||||| | |||| |||||||||||||||||||||||||||||| || |||||||| ||||||||| ||||| ||| || |||| |||| || | | | || | | |||||| |||| || ||| | | | ||| ||
GGCAAGGGTGATGGTTTGCATGTTGAGAGAAATGCTCTTCATGACAACTGGGATGATGCAGATGGGTACTACAgtaagttc-------tgctatcctatgtcc-----atttttctttgctagttt----------attgttttctcttgtgtcgtgctgttatggttgctagatcg-gtgagggattggagttgc

upper sequence: LOC_Os12g44330.2 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv01s0011g03350.t01 (Vitis vinifera), 5'ss of exon 6
GGCAAGGATGATGGTTTGCGCATCGAGAAAAATGCTCTTCATGACAACTGGGATGATGCCGAGGGGTACTATAgtaagt-tccaccatatgctaacct---tctcccttttagttttcttttgttaactgtggtcaacaaactattctttgctgtgtccatttgtttccattcctaacttatgcaaaactttgcag
|| | | ||||| || | || || | | || |||||||||||| ||||||||||| ||||| ||||||||| ||| | | || | | || | | ||||| ||| |||| || | || | || | | || | | | |||| ||| | ||| |
GGAAGAGGAGATGGCTTACTAATTGAAAGGAGTGGTCTTCATGACAATTGGGATGATGCAGAGGGATACTATAgtcagtatttgacgaatcatcatctgtgttttatttttattttcatttttctatcagtatttgaccagccatcatc-----tttttatttttttaattgcctgaa------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33690079|gb|CF318318.1|CF318318
EST:     CGAGAAAAATGCTCTTCATGACAACTGGGATGATGCCGAGGGGTACTATA                         CTTACCGTTTTGGGGAATTGCTGGATGGGCGCTATGAGATTACAGCAGCAC
genomic: CGAGAAAAATGCTCTTCATGACAACTGGGATGATGCCGAGGGGTACTATAgtaagttcca ... aactttgcagCTTACCGTTTTGGGGAATTGCTGGATGGGCGCTATGAGATTACAGCAGCAC
EST: gi|218495214|gb|FG943438.1|FG943438
EST:     CGAGAAAAATGCTCTTCATGACAACTGGGATGATGCCGAGGGGTACTATA                         CTTACCGTTTTGGGGAATTGCTGGATGGGCGCTATGAGATTACAGCAGCAC
genomic: CGAGAAAAATGCTCTTCATGACAACTGGGATGATGCCGAGGGGTACTATAgtaagttcca ... aactttgcagCTTACCGTTTTGGGGAATTGCTGGATGGGCGCTATGAGATTACAGCAGCAC
EST: gi|87016978|gb|CI286114.1|CI286114
EST:     CGAGAAAAATGCTCTTCATGACAACTGGGATGATGCCGAGGGGTACTATA                         CTTACCGTTTTGGGGAATTGCTGGATGGGCGCTATGAGATTACAGCAGCAC
genomic: CGAGAAAAATGCTCTTCATGACAACTGGGATGATGCCGAGGGGTACTATAgtaagttcca ... aactttgcagCTTACCGTTTTGGGGAATTGCTGGATGGGCGCTATGAGATTACAGCAGCAC