1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCAGGTTGCAGGTGATGATTATGGCCTGCTAGGTCATTTCTGCTTGACAGTGGCTCACAGGATATTTTCTAACAAAGTACTCGTGGAGCTTGAGAGTGTGgtatagctcctataagcttgttgatgctacatatttgcatgtagatcattatttaaatttcctttctgtattgcag
species | Oryza sativa |
transcript | LOC_Os12g44140.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGGCTCACAGGATATTTTCTAACAAAGTACTCGTGGAGCTTGAGAGTGTG GTCAGCAGGGTTCCATATCTCCATTTGCGTTCTCTTCCTACTTGGCATTCTEST: gi|58679580|gb|CK068267.1|CK068267
genomic: TGGCTCACAGGATATTTTCTAACAAAGTACTCGTGGAGCTTGAGAGTGTGgtatagctcc ... tgtattgcagGTCAGCAGGGTTCCATATCTCCATTTGCGTTCTCTTCCTACTTGGCATTCT
EST: TGGCTCACAGGATATTTTCTAACAAAGTACTCGTGGAGCTTGAGAGTGTG GTCAGCAGGGTTCCATATCTCCATTTGCGTTCTCTTCCTACTTGGCATTCTEST: gi|2798251|gb|AA751545.1|AA751545
genomic: TGGCTCACAGGATATTTTCTAACAAAGTACTCGTGGAGCTTGAGAGTGTGgtatagctcc ... tgtattgcagGTCAGCAGGGTTCCATATCTCCATTTGCGTTCTCTTCCTACTTGGCATTCT
EST: GTGGAGCTTGAGAGTGTG GTCAGCAGGGTTCCATATCTCCATTTGCGTTCTCTTCCTACTTGGCATTCTEST: gi|58600539|gb|CK011067.1|CK011067
genomic: GTGGAGCTTGAGAGTGTGgtatagctcc ... tgtattgcagGTCAGCAGGGTTCCATATCTCCATTTGCGTTCTCTTCCTACTTGGCATTCT
EST: TGGCTCACAGGATATTTTCTAACAAAGTACTCGTGGAGCTTGAGAGTGTG GTCAGCAGGGTTCCATATCTCCATTTGCGTTCTCTTCCTACTTGGCATTCTEST: gi|58602161|gb|CK012689.1|CK012689
genomic: TGGCTCACAGGATATTTTCTAACAAAGTACTCGTGGAGCTTGAGAGTGTGgtatagctcc ... tgtattgcagGTCAGCAGGGTTCCATATCTCCATTTGCGTTCTCTTCCTACTTGGCATTCT
EST: TGGCTCACAGGATATTTTCTAACAAAGTACTCGTGGAGCTTGAGAGTGTG GTCAGCAGGGTTCCATATCTCCATTTGCGTTCTCTTCCTACTTGGCATTCTEST: gi|218483279|gb|FG953413.1|FG953413
genomic: TGGCTCACAGGATATTTTCTAACAAAGTACTCGTGGAGCTTGAGAGTGTGgtatagctcc ... tgtattgcagGTCAGCAGGGTTCCATATCTCCATTTGCGTTCTCTTCCTACTTGGCATTCT
EST: GCTTGA-AGTGTG GTCAGCA-GGTTCCATATCTCCATTTGCG-TCTCTTCCTAC-TGGCATTCT
genomic: GCTTGAGAGTGTGgtatagctcc ... tgtattgcagGTCAGCAGGGTTCCATATCTCCATTTGCGTTCTCTTCCTACTTGGCATTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGGTTGCAGGTGATGATTATGGCCTGCTAGGTCATTTCTGCTTGACAGTGGCTCACAGGATATTTTCTAACAAAGTACTCGTGGAGCTTGAGAGTGTGgtatagctcctataagcttgttgatgctacatatttgcatgtagatcattatttaaatttcctttctgtattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT