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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACCTCTTTGCTGGTGTTGTGGATGGACGCAACATCTGGGCTGATGATCTCGCCGCATCTCTCACCACCCTCGAGTCTCTTGAGGCTATTGTTGGAAAGGgtaagcaattaagcatgaagttattatatatgttatattttaatgggcacaatttgcagtatccaataatatcctcaatttctgctcatccaacaatacctttcatttctgtag

Basic information

species Oryza sativa
transcript LOC_Os12g42884.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g42884.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G149751_T02 (Zea mays), 5'ss of exon 6
TACCTCTTTGCTGGTGTTGTGGATGGACGCAACATCTGGGCTGATGATCTCGCCGCATCTCTCACCACCCTCGAGTCTCTTGAGGCTATTGTTGGAAAGGgtaagcaattaagcatgaagttattatatatgttatattttaat--gggcacaatttgcagtatccaataatatcctcaatttctgctcatccaacaatacctttcatttctgtag
|||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||| ||| ||| |||||||||||||| ||||||| |||||||    || | || || | ||||| | | |  || | ||  ||   |  |||  | ||| ||||  |||||  |  | |  |||| |||                          
TACCTCTTTGCTGGTGTTGTGGATGGACGCAACATCTGGGCTGATGATCTTGCTACATCTCTCAGCACTCTCCAGTCTCTTGAGGCTGTTGTTGGGAAGGgta----atcatgcttgcacttattgtctgtcataaaattggatttagttacagctggcaatatctgataatgcctacca--tctgttcag-------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|300215517|gb|HO088143.1|HO088143
EST:     CGCCGCATCTCTCACCACCCTCGAGTCTCTTGAGGCTATTGTTGGAAAGG                         ACAAGCTTGTGGTCTCGACTTCCTGCTCACTCATGCACACCGCTGTGGATC
genomic: CGCCGCATCTCTCACCACCCTCGAGTCTCTTGAGGCTATTGTTGGAAAGGgtaagcaatt ... atttctgtagACAAGCTTGTGGTCTCGACTTCCTGCTCACTCATGCACACCGCTGTGGATC
EST: gi|300216253|gb|HO088038.1|HO088038
EST:     TTGTTGG-AAGG                         ACAAGCTTGTGGTCTCGACTTCCTGCTCACTCATGCACACCGCTGTGGATC
genomic: TTGTTGGAAAGGgtaagcaatt ... atttctgtagACAAGCTTGTGGTCTCGACTTCCTGCTCACTCATGCACACCGCTGTGGATC
EST: gi|29620902|gb|CB625913.1|CB625913
EST:     CGCCGCATCTCTCACCACCCTCGAGTCTCTTGAGGCTATTGTTGGAAAGG                         ACAAGCTTGTGGTCTCGACTTCCTGCTCACTCATGCACACCGCTGTGGATC
genomic: CGCCGCATCTCTCACCACCCTCGAGTCTCTTGAGGCTATTGTTGGAAAGGgtaagcaatt ... atttctgtagACAAGCTTGTGGTCTCGACTTCCTGCTCACTCATGCACACCGCTGTGGATC
EST: gi|29637650|gb|CB642659.1|CB642659
EST:     TGAGGTTACTTGCTGGAAAGG                         ACTAGCTTGTGGACTCGACTTCCTGCTCGCTCATGCACGCCGCTGTGGATC
genomic: TGAGGCTA-TTGTTGGAAAGGgtaagcaatt ... atttctgtagACAAGCTTGTGGTCTCGACTTCCTGCTCACTCATGCACACCGCTGTGGATC
EST: gi|2443164|gb|C74935.1|C74935
EST:     CGCCGCATCTCTCACCANCCTCGAGTCTCTTGAGGCTATTGTTGGAAAGG                         ACAAGCTTGTGGTCTCGACTTCCTGCTCANTCATGCACACCGCTGTGGATC
genomic: CGCCGCATCTCTCACCACCCTCGAGTCTCTTGAGGCTATTGTTGGAAAGGgtaagcaatt ... atttctgtagACAAGCTTGTGGTCTCGACTTCCTGCTCACTCATGCACACCGCTGTGGATC
EST: gi|428283|gb|D24431.1|D24431
EST:     CGCCGCATCTCTCACCACCCTCGAGTCTCTTGAGGCTATTGTTGGAAAGG                         ACAAGCTTGTGGTCTCGACTTCCTGCTCACTCATGCACACCGCTGTGGATC
genomic: CGCCGCATCTCTCACCACCCTCGAGTCTCTTGAGGCTATTGTTGGAAAGGgtaagcaatt ... atttctgtagACAAGCTTGTGGTCTCGACTTCCTGCTCACTCATGCACACCGCTGTGGATC
EST: gi|29615679|gb|CB620691.1|CB620691
EST:     CGCCGCATCTCTCACCACCCTCGAGTCTCTTGAGGCTATTGTTGGAAAGG                         ACAAGCTTGTGGTCTCGACTTCCTGCTCACTCATGCACACCGCTGTGGATC
genomic: CGCCGCATCTCTCACCACCCTCGAGTCTCTTGAGGCTATTGTTGGAAAGGgtaagcaatt ... atttctgtagACAAGCTTGTGGTCTCGACTTCCTGCTCACTCATGCACACCGCTGTGGATC
EST: gi|29635138|gb|CB640147.1|CB640147
EST:     CGCCGCATCTCTCACCACCCTCGAGTCTCTTGAGGCTATTGTTGGAAAGG                         ACAAGCTTGTGGTCTCGACTTCCTGCTCACTCATGCACACCGCTGTGGATC
genomic: CGCCGCATCTCTCACCACCCTCGAGTCTCTTGAGGCTATTGTTGGAAAGGgtaagcaatt ... atttctgtagACAAGCTTGTGGTCTCGACTTCCTGCTCACTCATGCACACCGCTGTGGATC
EST: gi|4881161|gb|AU065460.1|AU065460
EST:     CGCCGCATCTCTCACCACCCTCGAGTCTCTTGAGGCTATTGTTGGAAAGG                         ACAAGCTTGTGGTCTCGACTTCCTGCTCACTCATGCACACCGCTGTGGATC
genomic: CGCCGCATCTCTCACCACCCTCGAGTCTCTTGAGGCTATTGTTGGAAAGGgtaagcaatt ... atttctgtagACAAGCTTGTGGTCTCGACTTCCTGCTCACTCATGCACACCGCTGTGGATC
EST: gi|3766872|gb|AU030982.1|AU030982
EST:     GCCGCATCTCTCACCANCCNCGAGTCTCTTGAGGCTATTGTTGGGAAAGG                         ACA-GCTTGTGGTCTCGACTTCCTGCTCACTNCATGCACACCGCTGTGGA
genomic: GCCGCATCTCTCACCACCCTCGAGTCTCTTGAGGCTATTGTTGG-AAAGGgtaagcaatt ... atttctgtagACAAGCTTGTGGTCTCGACTTCCTGCTCACT-CATGCACACCGCTGTGGA