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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATGATGCGTTTGTTCAGTCCCCGAAAGACAACACTATTATTTGTTATACGTGATAAAACCAGGgtttgcctctttgttctttattctttcttgaatatatttactgttatgttttgtgcaagctgtttggaaatataatcattgctccatttacttgggccaatctcagacacatcgttgttttcatgtag

Basic information

species Oryza sativa
transcript LOC_Os12g41170.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g41170.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G390374_T01 (Zea mays), 5'ss of exon 6
GTCATGATGCGTTTGTTCAGTCCCCGAAAGACAACACTATTATTTGTTATACGTGATAAAACCAGGgtttgcctctttgttctttattctttcttgaatatatttactgttatgttttgtgcaagctgtttggaaatataatcattgctccatttacttgggccaatctcagacacatcgttgttttcatgtag
||||||||||||||||| ||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||     |||||||         ||||                  ||||     ||    |||||     ||| |||||| ||||  || ||||| |||||| || ||||||||||||||
GTCATGATGCGTTTGTTTAGTCCTCGGAAGACAACACTACTATTTGTTATACGTGATAAAACCAGGgtttgcctctc----ctttatt---------atat------------------tgca-----ttcttgaatat-----ttgttccattcacttaagcaaatcttagacacgtcattgttttcatgtag

upper sequence: LOC_Os12g41170.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA09G02490.1 (Glycine max), 5'ss of exon 6
GTCATGATGCGTTTGTTCAGTCCCCGAAAGACAACACTATTATTTGTTATACGTGATAAAACCAGGgtttgcctctttgttctttattctttcttgaatatatttactgttatgttttgtgcaagctgtttggaaatataatcattgctccatttacttgggccaatctcagacacatcgttgttttcatgtag
|||||||||||| | ||||||||||| || || ||| |  | |||||||||||||||||||| | ||| |          || |  | |||||||||  |  |  ||| || || |||   |  ||| |||  |  | | |||||   ||    |   |  ||                               
GTCATGATGCGTCTATTCAGTCCCCGGAAAACGACATTGCTTTTTGTTATACGTGATAAAACAAAGgtctag------aatcctggtcctttcttgagaacgtacacttttgtgattt---cctgctattta-atgttttatcatgtttctgcctgtctatgcag-----------------------------

upper sequence: LOC_Os12g41170.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA15G13380.1 (Glycine max), 5'ss of exon 6
GTCATGATGCGTTTGTTCAGTCCCCGAAAGACAACACTATTATTTGTTATACGTGATAAAACCAGGgtttgcctctttgttctttattctttcttgaatatatttactgttatgttttgtgcaagctgtttggaaatataatcattgctccatttacttgggccaatctcagacacatcgttgttttcatgtag
|||||||||||| | ||||||||||| || |||||| |  | |||||||||||||||||||| | ||| |          || |  | |||||||||  || |  ||| || || |||   || ||| ||   |  | |  ||||   ||    |   |  ||                               
GTCATGATGCGTCTATTCAGTCCCCGGAAAACAACATTGCTTTTTGTTATACGTGATAAAACAAAGgtctag------aatcctggtcctttcttgagaatgtacacttttgtgattt---catgctattca-atcttttgtcatgtttctggctgtctatgcag-----------------------------